GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000262-TA|BGIBMGA000262-PA|IPR000618|Insect cuticle
protein
         (110 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|c...    25   3.6  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    24   4.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   4.8  

>SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 113

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 53  PKYEFEYKVEDHHTKDHKSQHETRDGD-AVKGYYALHEPDGSERHVDY 99
           P Y  E K+   ++  ++   +  +G      YY  H P+G+  HV Y
Sbjct: 66  PLYNVEAKINHSYSAFYRPFTKRENGLWYANPYYMQHGPNGNYHHVYY 113


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 79  DAVKGYYALHEPDGSERHVDYHSDK 103
           DA+K  +A + P   ERH  +HS +
Sbjct: 319 DAMKTEHASNAPLTDERHFQFHSSE 343


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 9/44 (20%), Positives = 21/44 (47%)

Query: 60  KVEDHHTKDHKSQHETRDGDAVKGYYALHEPDGSERHVDYHSDK 103
           K +   ++  + +++  + D +   Y+ HEP+      D  S+K
Sbjct: 355 KSQGEISEQEEDEYDDAESDEMHSPYSTHEPESEPEDQDEPSEK 398


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.131    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 407,108
Number of Sequences: 5004
Number of extensions: 12132
Number of successful extensions: 28
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 3
length of query: 110
length of database: 2,362,478
effective HSP length: 64
effective length of query: 46
effective length of database: 2,042,222
effective search space: 93942212
effective search space used: 93942212
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)