GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000262-TA|BGIBMGA000262-PA|IPR000618|Insect cuticle
protein
         (110 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691...    28   1.4  
01_01_0616 + 4586086-4586835                                           27   3.3  
06_01_0504 + 3632108-3632281,3633532-3633699,3633797-3633883,363...    27   4.4  

>10_08_1052 -
           22567937-22568329,22568436-22568669,22568787-22569111,
           22569239-22569484,22569576-22569916,22570070-22570150,
           22570275-22570394,22570549-22570650,22570900-22571035,
           22571210-22571362,22572605-22572906
          Length = 810

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/47 (25%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 62  EDHHTKDHKSQHETRDGDAVKGYY-ALHEPDGSERHVDYHSDKHSGY 107
           + HH +  + + E++   A   YY   HE   +  H  YH  +H  +
Sbjct: 739 QHHHRQVEEEEEESKSSQATTHYYHHHHEQTTTTTHHHYHQHEHMSH 785


>01_01_0616 + 4586086-4586835
          Length = 249

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 80  AVKGYYALHEPDGSERHVDYHSD 102
           A +G YA H PDG   H D+  D
Sbjct: 71  AGRGVYATHGPDGCRVHPDFVED 93


>06_01_0504 +
          3632108-3632281,3633532-3633699,3633797-3633883,
          3634766-3634876,3635114-3635205,3635288-3635393,
          3635475-3635561,3637796-3638209
          Length = 412

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)

Query: 76 RDGDAVKGYYALHEPDGS 93
          RDG AV GY A  +PDG+
Sbjct: 6  RDGAAVAGYMAEDDPDGA 23


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.131    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,180
Number of Sequences: 37544
Number of extensions: 81951
Number of successful extensions: 198
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 3
length of query: 110
length of database: 14,793,348
effective HSP length: 72
effective length of query: 38
effective length of database: 12,090,180
effective search space: 459426840
effective search space used: 459426840
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)