GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000262-TA|BGIBMGA000262-PA|IPR000618|Insect cuticle
protein
         (110 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.85 
SB_50965| Best HMM Match : HEAT (HMM E-Value=1.2e-12)                  28   2.0  
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)                   28   2.0  
SB_35651| Best HMM Match : NUMOD3 (HMM E-Value=3.2)                    27   2.6  
SB_10578| Best HMM Match : NUMOD3 (HMM E-Value=3.2)                    27   2.6  
SB_47874| Best HMM Match : Keratin_B2 (HMM E-Value=4.9)                27   3.4  
SB_48322| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.5  
SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.0  
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)                   26   6.0  
SB_22636| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.9  
SB_989| Best HMM Match : No HMM Matches (HMM E-Value=.)                26   7.9  
SB_53470| Best HMM Match : E-MAP-115 (HMM E-Value=7.6)                 26   7.9  
SB_51729| Best HMM Match : HABP4_PAI-RBP1 (HMM E-Value=1.2)            26   7.9  

>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 82   KGYYALHEPDGSERHVDYHSDKHSGY 107
            KG Y  H+ DG  R ++Y+S    GY
Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGY 1767


>SB_50965| Best HMM Match : HEAT (HMM E-Value=1.2e-12)
          Length = 492

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 12/31 (38%), Positives = 16/31 (51%)

Query: 53  PKYEFEYKVEDHHTKDHKSQHETRDGDAVKG 83
           P  E + K   H +K H  QHE  DG++  G
Sbjct: 237 PDSEQDIKPRFHKSKTHSQQHEDGDGESDDG 267


>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1283

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 2/59 (3%)

Query: 54   KYEFEYKVEDHHTKDHKSQHETRDGDAVKGYYAL-HEPDGSERHVDYHS-DKHSGYGTT 110
            +Y  E   E  HT +   +  TR   +V+  Y+  H P    R+ D H   KHS  G +
Sbjct: 965  RYRIERSHESVHTPNDHRRSSTRSEHSVQRRYSNEHSPSRKRRNSDNHGHKKHSLTGVS 1023


>SB_35651| Best HMM Match : NUMOD3 (HMM E-Value=3.2)
          Length = 228

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 63  DHHTKDHKSQHE-TRDGDAVKGYYALHEPDGSERHVDYHSDKH 104
           DHH KDHK Q +  +D          H  D S+ H   H   H
Sbjct: 77  DHHHKDHKDQKDHAKDQSKDHKDQKDHAKDHSKDHPKDHPKNH 119


>SB_10578| Best HMM Match : NUMOD3 (HMM E-Value=3.2)
          Length = 379

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 63  DHHTKDHKSQHE-TRDGDAVKGYYALHEPDGSERHVDYHSDKH 104
           DHH KDHK Q +  +D          H  D S+ H   H   H
Sbjct: 18  DHHHKDHKDQKDHAKDQSKDHKDQKDHAKDHSKDHPKDHPKNH 60


>SB_47874| Best HMM Match : Keratin_B2 (HMM E-Value=4.9)
          Length = 253

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 7/42 (16%)

Query: 63  DHHTKDHKSQHETRDGDAVKGYYALHEPDGSERHVDYHSDKH 104
           DHH + H   H       V+ +   H    +++HV  H+D+H
Sbjct: 215 DHHVQSHTDHH-------VQSHTDQHVQSHTDQHVQSHTDQH 249


>SB_48322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 169

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 13/45 (28%), Positives = 22/45 (48%)

Query: 60  KVEDHHTKDHKSQHETRDGDAVKGYYALHEPDGSERHVDYHSDKH 104
           ++  H     ++QH+ RD    K + A   PDG E  V  H+ ++
Sbjct: 35  ELSKHQLTLAEAQHKARDRRKWKRFVAALCPDGDEEQVPAHTYRY 79


>SB_55438| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 391

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 54  KYEFEYKVEDHHTKDHKSQHETRDG-DAVKGYYALHEPDGSERHVDYHSDKHSGY 107
           +Y    + E+   K  +S+ E   G D  +G Y +++ DG E   +   ++   Y
Sbjct: 306 EYNVLQESEESPDKLEESEEERSSGSDGERGSYTVNQVDGEEEEEEEEEEEEDSY 360


>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
          Length = 5087

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 54   KYEFEYKVEDHHTKDHKSQHETRDG-DAVKGYYALHEPDGSERHVDYHSDKHSGY 107
            +Y    + E+   K  +S+ E   G D  +G Y +++ DG E   +   ++   Y
Sbjct: 950  EYNVLQESEESPDKLEESEEERSSGSDGERGSYTVNQVDGEEEEEEEEEEEEDSY 1004


>SB_22636| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 13/48 (27%), Positives = 18/48 (37%)

Query: 62  EDHHTKDHKSQHETRDGDAVKGYYALHEPDGSERHVDYHSDKHSGYGT 109
           +DH   DH   H   D D        H+ D  +   D+H D     G+
Sbjct: 110 DDHDDDDHDDDHHHHDDDDDDHDDDDHDDDHHDDDHDHHDDDDDDGGS 157


>SB_989| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 9/44 (20%), Positives = 23/44 (52%)

Query: 55  YEFEYKVEDHHTKDHKSQHETRDGDAVKGYYALHEPDGSERHVD 98
           +E E ++ +     ++ +H    G + +G Y+L++    ++H D
Sbjct: 174 FETEGELREGSASRYQCRHNNARGKSARGAYSLYKQGDPQKHED 217


>SB_53470| Best HMM Match : E-MAP-115 (HMM E-Value=7.6)
          Length = 192

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 62  EDHHTKDHKSQHETR-DGDAVKGYYALHEPDGSERHVDYHSDKHS 105
           ED H ++  ++HE R D +        H+ + +  H D H ++ +
Sbjct: 72  EDRHDEERNNEHEDRHDEERNNEEEDKHDEERNNEHEDRHDEERN 116


>SB_51729| Best HMM Match : HABP4_PAI-RBP1 (HMM E-Value=1.2)
          Length = 519

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 10/47 (21%), Positives = 23/47 (48%)

Query: 61  VEDHHTKDHKSQHETRDGDAVKGYYALHEPDGSERHVDYHSDKHSGY 107
           V +  T D + + E  + ++++ Y  L EP  +   +D ++  H  +
Sbjct: 90  VVESDTSDEEEEEEEEEEESMESYNDLDEPQANNDVIDTYNIMHVNF 136


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.315    0.131    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,107,022
Number of Sequences: 59808
Number of extensions: 99867
Number of successful extensions: 280
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 268
Number of HSP's gapped (non-prelim): 21
length of query: 110
length of database: 16,821,457
effective HSP length: 72
effective length of query: 38
effective length of database: 12,515,281
effective search space: 475580678
effective search space used: 475580678
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)