GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000262-TA|BGIBMGA000262-PA|IPR000618|Insect cuticle
protein
         (110 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g25840.1 68416.m03219 protein kinase family protein contains ...    28   1.6  
At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative ...    27   2.1  
At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family...    26   4.9  
At3g44850.1 68416.m04832 protein kinase-related contains eukaryo...    26   4.9  
At3g29075.1 68416.m03637 glycine-rich protein                          26   4.9  
At1g77660.1 68414.m09042 MORN (Membrane Occupation and Recogniti...    26   4.9  
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f...    25   8.6  
At2g44200.1 68415.m05500 expressed protein                             25   8.6  

>At3g25840.1 68416.m03219 protein kinase family protein contains
           Pfam profile: PF00069 eukaryotic protein kinase domain
          Length = 935

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 60  KVEDHHTKDHKSQHETRDGD-AVKGYYALHEPDGSERHVDYHSDK 103
           ++E HH K H+S   + D + A K +   H      RH  +H DK
Sbjct: 6   QIESHHRKHHRSSSSSDDTEKASKRHKHRHHKHHHHRH-RHHRDK 49


>At2g31320.1 68415.m03824 poly [ADP-ribose] polymerase, putative /
           NAD(+) ADP-ribosyltransferase, putative /
           poly[ADP-ribose] synthetase, putative similar to
           poly(ADP)-ribose polymerase [Zea mays] GI:3928871 ;
           contains Pfam profiles PF00644: Poly(ADP-ribose)
           polymerase catalytic domain, PF00645: Poly(ADP-ribose)
           polymerase and DNA-Ligase Zn-finger region, PF02877:
           Poly(ADP-ribose) polymerase, regulatory domain, PF00533:
           BRCA1 C Terminus (BRCT) domain
          Length = 983

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/30 (43%), Positives = 16/30 (53%)

Query: 81  VKGYYALHEPDGSERHVDYHSDKHSGYGTT 110
           VKG  A+HE  G + H     D +S Y TT
Sbjct: 496 VKGRSAVHEASGLQEHCHILEDGNSIYNTT 525


>At4g04980.1 68417.m00724 hydroxyproline-rich glycoprotein family
           protein Common family members: At4g18570, At3g25690,
           At5g61090 [Arabidopsis thaliana]
          Length = 681

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/49 (22%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 58  EYKVEDHHTKDHKSQHETRDGDAVKGYYALHEP-DGSERHVDYHSDKHS 105
           +++ E HH +  +++HE    D ++ +   H   +G E   +  ++ HS
Sbjct: 230 DFETEHHHIEGLETEHEIDANDHIEDFETEHHHIEGFETEHENETEDHS 278


>At3g44850.1 68416.m04832 protein kinase-related contains
          eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 534

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)

Query: 56 EFEYKVEDHHTKDHK--SQHETRDGDAVK-GYYALHEPDG 92
          E EY  ED  T+D+K    H  R GD  K G Y +    G
Sbjct: 13 ESEYSSEDEGTEDYKKGGYHTVRVGDTFKNGAYVIQSKLG 52


>At3g29075.1 68416.m03637 glycine-rich protein 
          Length = 294

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 8/51 (15%)

Query: 56  EFEYKVEDHHTKDHKSQHETRDGDAVKGYYALHEPDGSERHVDYHSDKHSG 106
           E+  K E  H   +  + E+   D VK  Y  HE DG + H      KHSG
Sbjct: 109 EYGRKTESEHGSGYGGRIES---DYVKPSYGGHEDDGDDGH-----KKHSG 151


>At1g77660.1 68414.m09042 MORN (Membrane Occupation and Recognition
           Nexus) repeat-containing protein
           /phosphatidylinositol-4-phosphate 5-kinase-related low
           similarity to phosphatidylinositol-4-phosphate 5-kinase
           AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
           Pfam profile PF02493: MORN repeat
          Length = 421

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/56 (21%), Positives = 24/56 (42%)

Query: 54  KYEFEYKVEDHHTKDHKSQHETRDGDAVKGYYALHEPDGSERHVDYHSDKHSGYGT 109
           K+  ++ +  +H ++         GD + G+   H  +G      +H  +  GYGT
Sbjct: 280 KFGVKHGLGSYHFRNGDKYAGEYFGDKIHGFGVYHFANGHYYEGAWHEGRKQGYGT 335


>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
           family protein / zinc finger (MYND type) family protein
           similar to ubiquitin-specific protease 16 (UBP16)
           [Arabidopsis thaliana] GI:11993477; contains Pfam
           profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
           PF01753: MYND finger
          Length = 731

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 64  HHTKDHKSQHETRDGDAVKGYYALHEPDGSERHVDYHS 101
           H  + HK +  + D D  K  Y   + D  E +VD+ S
Sbjct: 85  HWRRGHKEECRSPDYDEEKEEYVQSDYDAKESNVDFPS 122


>At2g44200.1 68415.m05500 expressed protein
          Length = 493

 Score = 25.4 bits (53), Expect = 8.6
 Identities = 13/51 (25%), Positives = 24/51 (47%)

Query: 60  KVEDHHTKDHKSQHETRDGDAVKGYYALHEPDGSERHVDYHSDKHSGYGTT 110
           K +D  TK+HK +H+ + G   K   +    D  E   + ++ + S +  T
Sbjct: 171 KGKDGDTKEHKKKHKRKSGKHQKQSSSRQRSDSEEDSGEENNGRKSHHQKT 221


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.315    0.131    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,111,434
Number of Sequences: 28952
Number of extensions: 65880
Number of successful extensions: 177
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 170
Number of HSP's gapped (non-prelim): 11
length of query: 110
length of database: 12,070,560
effective HSP length: 71
effective length of query: 39
effective length of database: 10,014,968
effective search space: 390583752
effective search space used: 390583752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)