Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000261-TA|BGIBMGA000261-PA|undefined
         (59 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    19   5.2  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    19   5.2  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    19   5.2  
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    18   6.8  

>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 18.6 bits (36), Expect = 5.2
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 33  SQRYPNKSYQNQNLQTE 49
           S  +PN+   NQ  +T+
Sbjct: 281 SMHFPNQYQMNQEYRTD 297


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 18.6 bits (36), Expect = 5.2
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 33  SQRYPNKSYQNQNLQTE 49
           S  +PN+   NQ  +T+
Sbjct: 229 SMHFPNQYQMNQEYRTD 245


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 18.6 bits (36), Expect = 5.2
 Identities = 6/17 (35%), Positives = 10/17 (58%)

Query: 33  SQRYPNKSYQNQNLQTE 49
           S  +PN+   NQ  +T+
Sbjct: 412 SMHFPNQYQMNQEYRTD 428


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
          protein.
          Length = 351

 Score = 18.2 bits (35), Expect = 6.8
 Identities = 5/10 (50%), Positives = 8/10 (80%)

Query: 34 QRYPNKSYQN 43
          ++YPN +Y N
Sbjct: 85 EQYPNPTYYN 94


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.322    0.137    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8152
Number of Sequences: 317
Number of extensions: 201
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 59
length of database: 114,650
effective HSP length: 39
effective length of query: 20
effective length of database: 102,287
effective search space:  2045740
effective search space used:  2045740
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.7 bits)
S2: 34 (17.8 bits)