GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000261-TA|BGIBMGA000261-PA|undefined
         (59 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    19   3.6  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    19   3.6  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 19.4 bits (38), Expect = 3.6
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 35  RYPNKSYQNQNLQTEN 50
           RY N++  NQN   +N
Sbjct: 421 RYHNQNAGNQNADNQN 436


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 19.4 bits (38), Expect = 3.6
 Identities = 8/27 (29%), Positives = 11/27 (40%)

Query: 33  SQRYPNKSYQNQNLQTENIIIKLKSYF 59
           +  Y N +Y N N    N     K Y+
Sbjct: 93  NNNYNNNNYNNYNYNNNNYNNYKKLYY 119


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.137    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,212
Number of Sequences: 429
Number of extensions: 387
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 59
length of database: 140,377
effective HSP length: 39
effective length of query: 20
effective length of database: 123,646
effective search space:  2472920
effective search space used:  2472920
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.1 bits)
S2: 35 (18.2 bits)