GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000261-TA|BGIBMGA000261-PA|undefined
         (59 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g01630.1 68418.m00079 BRCA2 repeat-containing protein low sim...    25   6.4  
At4g00020.1 68417.m00002 BRCA2 repeat-containing protein low sim...    25   6.4  

>At5g01630.1 68418.m00079 BRCA2 repeat-containing protein low
           similarity to breast cancer susceptibility protein
           [Gallus gallus] GI:19568157; contains Pfam profile
           PF00634: BRCA2 repeat
          Length = 1155

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)

Query: 24  DMLGRKRVLSQRYPNKS 40
           D L  K+VLS RYP KS
Sbjct: 490 DTLTSKKVLSTRYPEKS 506


>At4g00020.1 68417.m00002 BRCA2 repeat-containing protein low
           similarity to SP|P51587 Breast cancer type 2
           susceptibility protein {Homo sapiens}; contains Pfam
           profile PF00634: BRCA2 repeat
          Length = 765

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 11/17 (64%), Positives = 12/17 (70%)

Query: 24  DMLGRKRVLSQRYPNKS 40
           D L  K+VLS RYP KS
Sbjct: 486 DTLTSKKVLSTRYPEKS 502


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.137    0.370 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 743,011
Number of Sequences: 28952
Number of extensions: 13537
Number of successful extensions: 27
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 2
length of query: 59
length of database: 12,070,560
effective HSP length: 39
effective length of query: 20
effective length of database: 10,941,432
effective search space: 218828640
effective search space used: 218828640
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)