Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000259-TA|BGIBMGA000259-PA|IPR000618|Insect cuticle
protein, IPR002395|HMW kininogen
         (177 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_30178| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_39107| Best HMM Match : Lyase_8 (HMM E-Value=0.016)                 27   8.7  

>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 131  KGVYSLHEADGTIRTVEYSADKHSGF 156
            KG Y  H+ DG  RT+EY +    G+
Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGY 1767


>SB_30178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 16/56 (28%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 107 EYKVEDPHTGDNKYQHETRDGDVVKGVYSLHE-ADGTIRTVEYSADKHSGFNAVVR 161
           EY +   H     Y++ TR   V++  Y++HE A  TI       + H+   +V+R
Sbjct: 44  EYPMSTIHDARVCYEYHTRCTSVLRVPYTMHECATSTIHDARVCYEYHTRCTSVLR 99


>SB_39107| Best HMM Match : Lyase_8 (HMM E-Value=0.016)
          Length = 872

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 108 YKVEDPHTGDNKYQHETRDGDVVKGVYSLHEADGTIRTVEYSADKHSGFNAVVRREGH 165
           YK  +P   D   +   +DG   KG Y L+   G++  +++   K  G        GH
Sbjct: 135 YKTSNPTISDTTLEKRLQDGSPSKGSYYLNTI-GSLDILQWVVGKAGGAAPETTPSGH 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,282,794
Number of Sequences: 59808
Number of extensions: 100805
Number of successful extensions: 136
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 135
Number of HSP's gapped (non-prelim): 3
length of query: 177
length of database: 16,821,457
effective HSP length: 78
effective length of query: 99
effective length of database: 12,156,433
effective search space: 1203486867
effective search space used: 1203486867
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 57 (27.1 bits)