Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000259-TA|BGIBMGA000259-PA|IPR000618|Insect cuticle
protein, IPR002395|HMW kininogen
         (177 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22580.1 68418.m02637 expressed protein                             27   5.4  
At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recogniti...    27   9.4  

>At5g22580.1 68418.m02637 expressed protein
          Length = 111

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 10/36 (27%), Positives = 23/36 (63%)

Query: 119 KYQHETRDGDVVKGVYSLHEADGTIRTVEYSADKHS 154
           K++ +T+  +++KG+ +L     T+++ E+  DK S
Sbjct: 13  KFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKES 48


>At2g35170.1 68415.m04314 MORN (Membrane Occupation and Recognition
           Nexus) repeat-containing protein
           /phosphatidylinositol-4-phosphate 5-kinase-related low
           similarity to phosphatidylinositol-4-phosphate 5-kinase
           AtPIP5K1 [Arabidopsis thaliana] GI:3702691; contains
           Pfam profile PF02493: MORN repeat
          Length = 484

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 118 NKYQHETRDGDVVKGVYSLHEADGTIRTVEYSADKHSGFNAVVRREGH 165
           ++Y  E + G V  G+ S H  +G     EY ADK  GF       GH
Sbjct: 321 SRYDGEFKWG-VKHGLGSYHFRNGDAYAGEYFADKMHGFGVYHFANGH 367


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.314    0.131    0.376 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,247
Number of Sequences: 28952
Number of extensions: 68945
Number of successful extensions: 92
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 91
Number of HSP's gapped (non-prelim): 2
length of query: 177
length of database: 12,070,560
effective HSP length: 77
effective length of query: 100
effective length of database: 9,841,256
effective search space: 984125600
effective search space used: 984125600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)