Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000258-TA|BGIBMGA000258-PA|IPR000618|Insect cuticle
protein
         (101 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.17 
SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)                   30   0.38 
SB_57086| Best HMM Match : PT (HMM E-Value=2.4)                        29   0.51 
SB_34999| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.6  
SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)                     28   1.6  
SB_47874| Best HMM Match : Keratin_B2 (HMM E-Value=4.9)                27   3.6  
SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)                     26   4.7  
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.3  
SB_9814| Best HMM Match : DUF413 (HMM E-Value=4.4)                     25   8.3  
SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.3  
SB_34921| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.3  
SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2)                     25   8.3  

>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 51   DFEYKVSDPHTGDHKSQHESRDGDVVKGY--YSLHQPDGSIRHVDYHGD 97
            D  +   +   GD   +H+  DGD V  +  Y+    D  +RH DY GD
Sbjct: 1863 DVRHDEYNDEDGDSDVRHDDYDGDSVVRHDDYNDDNGDSDVRHDDYDGD 1911



 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 5/52 (9%)

Query: 51   DFEYKVSDPHTGDHKSQHESR-----DGDVVKGYYSLHQPDGSIRHVDYHGD 97
            D  +  ++   GD   +H+       D DV    Y+    D  +RH DY GD
Sbjct: 1835 DVRHDDNNDDDGDSDVRHDDNNDDDGDSDVRHDEYNDEDGDSDVRHDDYDGD 1886


>SB_12271| Best HMM Match : DUF1079 (HMM E-Value=1.2)
          Length = 1716

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 42  YDYYTHPKFDFEYKVSDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSIRHVDYHGDHHS 100
           +D+   P++   +     +TG+H  QH ++      G +  + P   I H   HGDH++
Sbjct: 361 HDHGNQPRYTGNHDNQPRYTGNHDDQHSNQCRR--PGNHG-NLPSNQIGHTGNHGDHYT 416


>SB_57086| Best HMM Match : PT (HMM E-Value=2.4)
          Length = 226

 Score = 29.5 bits (63), Expect = 0.51
 Identities = 12/51 (23%), Positives = 21/51 (41%)

Query: 19  HAFSSQHIHKYDGXXXXXXXXXXYDYYTHPKFDFEYKVSDPHTGDHKSQHE 69
           H ++ Q+ H+Y               YTH ++  +Y    PH   H+  H+
Sbjct: 64  HQYTHQYTHQYTHPYTHPYTHQYTHQYTHHQYTHQYTHQYPHQYPHQYPHQ 114


>SB_34999| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 62  GDHKSQHESRDG--DVVKGYYSLHQPDGSIR 90
           GDH+S HE + G  D+ +G ++  +P+  IR
Sbjct: 106 GDHQSHHEEKRGLQDLAQGLHACARPEKLIR 136


>SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)
          Length = 125

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 78  GYYSLHQPDGSIRHVDYHG-DHHSG 101
           GY+  H  D  I H DY G DH+ G
Sbjct: 69  GYHGYHDHDVHIHHHDYGGHDHYDG 93


>SB_47874| Best HMM Match : Keratin_B2 (HMM E-Value=4.9)
          Length = 253

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 45  YTHPKFDFEYKVSDPHTGDHKSQHESRDGDV-VKGYYSLHQPDGSIRHVDYHGDHH 99
           Y H         +D H   H   H   + D  V+ +   H    +  HV  H DHH
Sbjct: 170 YNHTLTTILQSPTDHHVQSHTDHHVLSNTDHNVQSHTDHHVLSNTDHHVQSHTDHH 225


>SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)
          Length = 1481

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 61  TGDHKSQHESRDGDVVKGYYSLHQPDGSIRHVDYHGD 97
           +  H S H+  D D + G+ +  Q +   R +DY G+
Sbjct: 123 SSSHMSAHKM-DDDYLSGFAADEQEESDARELDYEGE 158


>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 45  YTHPKFDFEYKVSDPHTGDHKSQHESRDGDVVKGYYSLHQPD 86
           Y+HP     Y+  +   GD  S+ E  + + ++     H PD
Sbjct: 74  YSHPINPMVYRGINKDAGDSDSEKEQEELNELENLLKKHDPD 115


>SB_9814| Best HMM Match : DUF413 (HMM E-Value=4.4)
          Length = 422

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 53  EYKVSDPHTGDHKSQHESRDGD 74
           +Y VSD H GD     + R GD
Sbjct: 397 DYDVSDDHGGDDYDDSDDRGGD 418


>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/15 (60%), Positives = 9/15 (60%)

Query: 51   DFEYKVSDPHTGDHK 65
            DF Y   DPHT  HK
Sbjct: 1425 DFAYVARDPHTSKHK 1439


>SB_34921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 44  YYTHPKFDFEYKVSDPHTGDHKSQHESRDGDVVKGYYSLH 83
           Y +H  F    K +D   G H+   E+   ++ K  + LH
Sbjct: 65  YSSHKAFSDVVKETDDKAGQHELIAENMSAEIYKELHKLH 104


>SB_18731| Best HMM Match : DUF1309 (HMM E-Value=2)
          Length = 356

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 19/75 (25%), Positives = 25/75 (33%), Gaps = 2/75 (2%)

Query: 18  EHAFSSQH-IHKYDGXXXXXXXXXXYDYYTHPKFDFEYKVSDPHTGDHKSQHESRDGDVV 76
           EH +   H  H Y G          Y     P      + +D  + D KSQ      D+ 
Sbjct: 250 EHVYGDYHGFHGYHGYHGFHGGFGAYRKEQVPHARTN-QTADDTSADKKSQESRPKRDLY 308

Query: 77  KGYYSLHQPDGSIRH 91
            GY       GS+ H
Sbjct: 309 TGYLDYLHYQGSLWH 323


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.136    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,492,799
Number of Sequences: 59808
Number of extensions: 134607
Number of successful extensions: 274
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 263
Number of HSP's gapped (non-prelim): 17
length of query: 101
length of database: 16,821,457
effective HSP length: 71
effective length of query: 30
effective length of database: 12,575,089
effective search space: 377252670
effective search space used: 377252670
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)