GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000258-TA|BGIBMGA000258-PA|IPR000618|Insect cuticle
protein
         (101 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S...    27   0.56 
SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|c...    25   2.3  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   3.0  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    24   3.9  
SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces pom...    24   5.2  
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    23   6.9  
SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyc...    23   9.1  
SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease |Schizosacc...    23   9.1  
SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual        23   9.1  

>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 462

 Score = 27.1 bits (57), Expect = 0.56
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 5/48 (10%)

Query: 43  DYYTHPKFDFEYKVSDPHTGDHKSQHESRDGDVVKGYYSLH-QPDGSI 89
           DY     FD  +++ D HTG      E       +G +S+  QPDGS+
Sbjct: 278 DYLVSASFDTTWRLWDVHTGVELLMQEGHS----EGIFSIACQPDGSL 321


>SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 113

 Score = 25.0 bits (52), Expect = 2.3
 Identities = 12/48 (25%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 48  PKFDFEYKVSDPHTGDHKSQHESRDGD-VVKGYYSLHQPDGSIRHVDY 94
           P ++ E K++  ++  ++   +  +G      YY  H P+G+  HV Y
Sbjct: 66  PLYNVEAKINHSYSAFYRPFTKRENGLWYANPYYMQHGPNGNYHHVYY 113


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 2/74 (2%)

Query: 18   EHAFSSQHIHKYD--GXXXXXXXXXXYDYYTHPKFDFEYKVSDPHTGDHKSQHESRDGDV 75
            E  FS  +IH  D  G                  F+ +Y +  P TGD  + H +RD  V
Sbjct: 2894 EVKFSKLNIHFRDEEGVDAGGVTREWLQVLARQMFNPDYALFLPVTGDATTFHPNRDSSV 2953

Query: 76   VKGYYSLHQPDGSI 89
               + S  +  G I
Sbjct: 2954 NPDHLSFFKFTGRI 2967


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 24.2 bits (50), Expect = 3.9
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)

Query: 53  EYKVSDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSIRHVDYHGDHHSG 101
           +Y  S P T  + S+ ++   D V G    +   GS  H   HG  H G
Sbjct: 173 DYSQSYP-TDTYGSRQKATPSDTVGGGAYDYSSSGSHTHGGSHGTEHRG 220


>SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 79

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 53 EYKVSDPHTGDHKSQHESRDGDVVKGY-YSLHQPDGS 88
          E +  + H G+   +H+   G+V  GY  ++H P+ S
Sbjct: 28 EKEYLEEHEGEVGEEHQKNTGNVRGGYKAAMHNPNVS 64


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 50  FDFEYKVSDPHTGDHKSQHESRDGDVVKGYYSLH 83
           F+ E +VS P+       H+  +  V K Y++LH
Sbjct: 142 FEVELRVSHPNWAFVSWSHDDLNELVDKSYHNLH 175


>SPBC1289.11 |spf38|cwf17|splicing factor Spf38|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 340

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 80  YSLHQPDGSIRHVDYH 95
           Y L   +GS+ HVD+H
Sbjct: 304 YVLPGHEGSVNHVDFH 319


>SPAC24C9.14 |otu1|mug141|ubiquitin-specific protease
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 9/27 (33%), Positives = 17/27 (62%)

Query: 46  THPKFDFEYKVSDPHTGDHKSQHESRD 72
           T P F  + ++S+P    H+S++ S+D
Sbjct: 98  TKPTFPPQTEISNPPAVSHQSKNTSQD 124


>SPCC1840.04 |||caspase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 5/41 (12%)

Query: 60  HTGDHKSQHESRDGDVVKGY----YSL-HQPDGSIRHVDYH 95
           H   H  Q +  DGD V GY    Y L HQ  G I   + H
Sbjct: 210 HYSGHGGQTKDLDGDEVDGYDETIYPLDHQYAGQIIDDEMH 250


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.136    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 467,628
Number of Sequences: 5004
Number of extensions: 16707
Number of successful extensions: 34
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 29
Number of HSP's gapped (non-prelim): 9
length of query: 101
length of database: 2,362,478
effective HSP length: 63
effective length of query: 38
effective length of database: 2,047,226
effective search space: 77794588
effective search space used: 77794588
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)