GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000258-TA|BGIBMGA000258-PA|IPR000618|Insect cuticle
protein
         (101 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    26   4.1  
AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical ...    26   5.5  
Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical pr...    25   7.2  
U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical pr...    25   9.6  
U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical pr...    25   9.6  

>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 43  DYYTHPKFDFEYKVSDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSIRHVDYHGDHH 99
           +++ H     E+ V   H G+H   H S       G +  H   G   H   H  HH
Sbjct: 388 EHHEHAAHHDEHGVHHRHHGEHHGTHHSPAHHGEHGTH--HGHHGEHHHAPAHHGHH 442



 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 60  HTGDHKSQHESRDGDVVKGYYSLHQPDGSIRHVDYHGDHHSG 101
           H   H   HE   GD   G + +H       H   H  HH G
Sbjct: 632 HHAPHHEHHEHH-GDHHHGSHGVHHGHHGTHHSLAHHGHHGG 672


>AC024801-9|AAF59653.3|  791|Caenorhabditis elegans Hypothetical
          protein Y50D7A.1 protein.
          Length = 791

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/11 (72%), Positives = 10/11 (90%)

Query: 43 DYYTHPKFDFE 53
          ++YTHPKF FE
Sbjct: 80 EFYTHPKFQFE 90


>Z92970-2|CAB07481.2| 1461|Caenorhabditis elegans Hypothetical protein
            H06O01.2 protein.
          Length = 1461

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 6/43 (13%)

Query: 63   DHKSQHESRDGDVVKGYYSLHQPDGSIR------HVDYHGDHH 99
            DHK +   +D +  +G   +   +G+ +      H D+H DHH
Sbjct: 1407 DHKERDREKDRERNRGERRMDHGEGTSKDHHREHHKDHHKDHH 1449


>U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical
           protein C01F4.2a protein.
          Length = 986

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 2/35 (5%)

Query: 68  HESRDGDVVKGYYSLHQPDGSIRHVDYHGDH-HSG 101
           HES  G ++  + +  + D S RH   HGDH H G
Sbjct: 753 HESHPGVLLSPFPATLEEDSSPRH-HRHGDHSHIG 786


>U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical
           protein F53A9.6 protein.
          Length = 86

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 78  GYYSLHQPDGSIRHVDYHGDHHSG 101
           G+   H    S  H  +HG HH G
Sbjct: 45  GHMDTHHHHDSHHHGGHHGGHHGG 68


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.136    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,519,738
Number of Sequences: 27539
Number of extensions: 90604
Number of successful extensions: 168
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 156
Number of HSP's gapped (non-prelim): 14
length of query: 101
length of database: 12,573,161
effective HSP length: 70
effective length of query: 31
effective length of database: 10,645,431
effective search space: 330008361
effective search space used: 330008361
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)