GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000258-TA|BGIBMGA000258-PA|IPR000618|Insect cuticle
protein
         (101 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67870.1 68414.m07750 glycine-rich protein contains non-conse...    33   0.045
At1g69690.1 68414.m08020 TCP family transcription factor, putati...    30   0.32 
At1g51680.2 68414.m05823 4-coumarate--CoA ligase 1 / 4-coumaroyl...    29   0.42 
At1g51680.1 68414.m05822 4-coumarate--CoA ligase 1 / 4-coumaroyl...    29   0.42 
At2g40110.1 68415.m04931 yippee family protein similar to mdgl-1...    27   3.0  
At5g44670.1 68418.m05473 expressed protein contains Pfam:PF01697...    25   6.8  
At4g14070.1 68417.m02172 AMP-binding protein, putative similar t...    25   6.8  
At1g78070.2 68414.m09098 WD-40 repeat family protein contains Pf...    25   9.0  
At1g78070.1 68414.m09097 WD-40 repeat family protein contains Pf...    25   9.0  

>At1g67870.1 68414.m07750 glycine-rich protein contains
           non-consensus GG donor splice site at exon2; modeled to
           est match.
          Length = 279

 Score = 32.7 bits (71), Expect = 0.045
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 60  HTGDHKSQHESRDGDVVKGYYSL-HQPDGSIRHVDYHGDHHSG 101
           H G H  QH+   G   +G + + HQ    ++H D HG  H G
Sbjct: 170 HQGGHGMQHQGMHGMQHQGGHGMEHQGGHGMQHQDMHGMQHQG 212



 Score = 30.3 bits (65), Expect = 0.24
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 60  HTGDHKSQHESRDGDVVKGYYSL-HQPDGSIRHVDYHGDHHSG 101
           H G H  QH+   G   +G + + HQ    ++H   HG  H G
Sbjct: 194 HQGGHGMQHQDMHGMQHQGRHGMQHQGGHEMQHQGMHGMQHQG 236



 Score = 29.9 bits (64), Expect = 0.32
 Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 1/43 (2%)

Query: 60  HTGDHKSQHESRDGDVVKGYYSL-HQPDGSIRHVDYHGDHHSG 101
           H G H  QH+   G   +G + + HQ    ++H   HG  H G
Sbjct: 146 HQGGHGMQHQGMHGMQHQGGHGMQHQGGHGMQHQGMHGMQHQG 188



 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)

Query: 60  HTGDHKSQHESRDGDVVKGYYSL-HQPDGSIRHVDYHGDHH 99
           H G H  QH+   G   +G + + HQ    + H   HG  H
Sbjct: 162 HQGGHGMQHQGGHGMQHQGMHGMQHQGGHGMEHQGGHGMQH 202


>At1g69690.1 68414.m08020 TCP family transcription factor, putative
           similar to PCF1 (GI:2580438) and PCF2 [(GI:2580440)
           Oryza sativa]
          Length = 325

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 4/31 (12%)

Query: 61  TGDHKSQHESRDGDVVKGYYSLHQPDGSIRH 91
           TG+H +  ++RDGD    ++  HQ DGS  H
Sbjct: 297 TGNHNNNQQNRDGD----HHHNHQEDGSTSH 323


>At1g51680.2 68414.m05823 4-coumarate--CoA ligase 1 /
           4-coumaroyl-CoA synthase 1 (4CL1) identical to SP|Q42524
           4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)
           (4-coumaroyl-CoA synthase 1) {Arabidopsis thaliana}
          Length = 490

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 53  EYKVSDPHTGDHKSQHES-----RDGDVVKGYYSLHQPDGSIRHVDYHGDHHSG 101
           E K+ DP TGD  S+++      R   ++KGY  L+ P  +   +D  G  H+G
Sbjct: 389 EMKIVDPDTGDSLSRNQPGEICIRGHQIMKGY--LNNPAATAETIDKDGWLHTG 440


>At1g51680.1 68414.m05822 4-coumarate--CoA ligase 1 /
           4-coumaroyl-CoA synthase 1 (4CL1) identical to SP|Q42524
           4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1)
           (4-coumaroyl-CoA synthase 1) {Arabidopsis thaliana}
          Length = 561

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 7/54 (12%)

Query: 53  EYKVSDPHTGDHKSQHES-----RDGDVVKGYYSLHQPDGSIRHVDYHGDHHSG 101
           E K+ DP TGD  S+++      R   ++KGY  L+ P  +   +D  G  H+G
Sbjct: 389 EMKIVDPDTGDSLSRNQPGEICIRGHQIMKGY--LNNPAATAETIDKDGWLHTG 440


>At2g40110.1 68415.m04931 yippee family protein similar to mdgl-1
           [Mus musculus] GI:10441648, Yippee protein [Drosophila
           melanogaster] GI:5713279; contains Pfam profile PF03226:
           Yippee putative zinc-binding protein
          Length = 130

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 64  HKSQHESRDGDVVKGYYSLHQPDGSIRHVDYHGDHHSG 101
           H+   + ++G  V   + +  PDGS   V  HG H  G
Sbjct: 87  HEKNQKYKEGKSVLERFKISGPDGSNYWVSSHGRHIGG 124


>At5g44670.1 68418.m05473 expressed protein contains Pfam:PF01697
           Domain of unknown function
          Length = 519

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 11/52 (21%)

Query: 48  PKFDFEYKVSDPH---TGDHKSQHESRDGDVVKGYYSLHQPDGSIRHVDYHG 96
           P+ D +Y V   +   TG H SQH       ++G  + H+ +G IR+  YHG
Sbjct: 421 PRRDRKYAVQPRNVFATGVHMSQH-------LQGK-TYHRAEGKIRYFHYHG 464


>At4g14070.1 68417.m02172 AMP-binding protein, putative similar to
           AMP-binding protein [gi:1617272] from Brassica napus;
           contains Pfam AMP-binding enzyme domain PF00501;
           identical to cDNA acyl-CoA synthetase-like protein
           GI:20799730
          Length = 727

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 5/39 (12%)

Query: 47  HPKFDFEYKVSDPHTGD-----HKSQHESRDGDVVKGYY 80
           HP    E+K+ DP T +      K   + R   V+KGYY
Sbjct: 520 HPMHGTEFKIVDPETNNVLPPGSKGIIKVRGPQVMKGYY 558


>At1g78070.2 68414.m09098 WD-40 repeat family protein contains
          Pfam profile PF00400: WD domain, G-beta repeat
          Length = 447

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/28 (32%), Positives = 19/28 (67%)

Query: 51 DFEYKVSDPHTGDHKSQHESRDGDVVKG 78
          DF++++S+  T +  S  E+R+G  ++G
Sbjct: 43 DFDFELSESKTNNETSALEARNGKDIQG 70


>At1g78070.1 68414.m09097 WD-40 repeat family protein contains
          Pfam profile PF00400: WD domain, G-beta repeat
          Length = 229

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/28 (32%), Positives = 19/28 (67%)

Query: 51 DFEYKVSDPHTGDHKSQHESRDGDVVKG 78
          DF++++S+  T +  S  E+R+G  ++G
Sbjct: 43 DFDFELSESKTNNETSALEARNGKDIQG 70


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.136    0.435 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,387,503
Number of Sequences: 28952
Number of extensions: 86839
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 13
length of query: 101
length of database: 12,070,560
effective HSP length: 70
effective length of query: 31
effective length of database: 10,043,920
effective search space: 311361520
effective search space used: 311361520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)