GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000257-TA|BGIBMGA000257-PA|IPR000618|Insect cuticle
protein
         (101 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    27   2.6  
11_03_0010 - 8922361-8922375,8923888-8924610                           26   4.6  
08_02_1446 + 27156449-27156790,27157961-27158042,27158698-271587...    26   6.0  
05_03_0263 + 11234850-11235044,11235413-11237341                       26   6.0  
03_03_0191 + 15302384-15302422,15302780-15303246,15303356-153035...    26   6.0  
10_06_0143 - 11183574-11183761,11183989-11184344,11184437-111845...    25   8.0  
06_01_0838 - 6360232-6360460,6360571-6360719,6360825-6360933,636...    25   8.0  
03_02_0065 + 5358388-5358397,5358492-5358562,5359132-5359219,535...    25   8.0  

>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/23 (47%), Positives = 12/23 (52%)

Query: 77  KGYYSLHQPDGSIRHVDYHGDHH 99
           KG +  H  D   RH   HGDHH
Sbjct: 532 KGRHHRHHHDHRHRHGHSHGDHH 554


>11_03_0010 - 8922361-8922375,8923888-8924610
          Length = 245

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/23 (56%), Positives = 14/23 (60%)

Query: 71  RDGDVVKGYYSLHQPDGSIRHVD 93
           RDG  V   YS   P GSIR+VD
Sbjct: 195 RDGSDVPAAYSTGCPAGSIRNVD 217


>08_02_1446 +
           27156449-27156790,27157961-27158042,27158698-27158792,
           27159421-27159492,27159572-27159651,27159728-27159827,
           27160064-27160141,27160408-27160455,27160570-27160638,
           27161035-27161175,27161262-27161516
          Length = 453

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 58  DPHTGDHKSQHESRDGDVVKGYYSLHQPD 86
           DP T DH   +E+ D   +   +  HQ D
Sbjct: 343 DPETTDHPQDYETEDASQISEAHLDHQAD 371


>05_03_0263 + 11234850-11235044,11235413-11237341
          Length = 707

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 56  VSDPHTGDHK---SQHESRDGDVVKGYYSLHQPDGSIRHVDYHGDHH 99
           +SD HT       S H+ R   +V  ++ LHQ DG   H++  GD +
Sbjct: 460 ISDLHTIHEDVVTSAHQKRAALIVLPFHKLHQMDG---HMESLGDEY 503


>03_03_0191 +
          15302384-15302422,15302780-15303246,15303356-15303563,
          15303723-15303794,15304295-15304430,15304619-15304890,
          15305197-15305345,15305818-15305947,15306244-15306258
          Length = 495

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 2/47 (4%)

Query: 52 FEYKVSDPHTGDHKSQHESRDGDV-VKGYYSLHQPDGSIR-HVDYHG 96
          FE K+ D     + S+HE+  G V +    S H+ D   + HVD  G
Sbjct: 17 FEGKLKDGFARSNNSEHENGAGTVSISSKKSKHRVDSEKKPHVDISG 63


>10_06_0143 -
           11183574-11183761,11183989-11184344,11184437-11184592,
           11184825-11184994,11185906-11186064,11186856-11187164,
           11187281-11187576,11187825-11188174,11188279-11188434,
           11188634-11188803,11189289-11189447,11190702-11191010,
           11191172-11191458,11191911-11192263,11192366-11192521,
           11192680-11192849,11195800-11195958,11196937-11197254,
           11197658-11197786
          Length = 1449

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/33 (39%), Positives = 17/33 (51%)

Query: 64  HKSQHESRDGDVVKGYYSLHQPDGSIRHVDYHG 96
           H   H S +  +  GY SL+QP   IR V+  G
Sbjct: 470 HVQNHWSLEWMIKNGYISLNQPKLPIRAVNLGG 502


>06_01_0838 -
           6360232-6360460,6360571-6360719,6360825-6360933,
           6361446-6362276,6362865-6362969,6363084-6363180,
           6363303-6363341,6363435-6363477
          Length = 533

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 73  GDVVKGYYSLHQPDGSIRHVDYHGD 97
           G ++KGYYSL+   G  R   + GD
Sbjct: 507 GKIMKGYYSLNARIGGDRSQCHQGD 531


>03_02_0065 +
           5358388-5358397,5358492-5358562,5359132-5359219,
           5359730-5359815,5360211-5360265,5360357-5360544
          Length = 165

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 51  DFEYKVSDPHTGDHKSQHESRDGDVV 76
           D   +  +P   DH S HE RDG  +
Sbjct: 88  DTNAEAGEPERKDHLSGHEMRDGSTM 113


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.135    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,696,138
Number of Sequences: 37544
Number of extensions: 85174
Number of successful extensions: 136
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 8
length of query: 101
length of database: 14,793,348
effective HSP length: 71
effective length of query: 30
effective length of database: 12,127,724
effective search space: 363831720
effective search space used: 363831720
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)