GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000256-TA|BGIBMGA000256-PA|IPR000618|Insect cuticle
protein
         (101 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97549-9|AAB52849.2|  472|Caenorhabditis elegans Hypothetical pr...    32   0.083
U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical pr...    29   0.44 
U70845-2|AAB09100.1|  102|Caenorhabditis elegans Hypothetical pr...    29   0.59 
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    28   1.4  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    27   2.4  
U80445-9|AAB37799.1|  264|Caenorhabditis elegans Fk506-binding p...    27   3.1  
U80445-8|AAK68259.1|  300|Caenorhabditis elegans Fk506-binding p...    27   3.1  
U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical pr...    26   4.1  
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ...    26   4.1  
U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical pr...    26   5.5  
AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    26   5.5  
Z81556-1|CAB04524.1|  965|Caenorhabditis elegans Hypothetical pr...    25   7.2  
U23523-4|AAC46557.1|   83|Caenorhabditis elegans Hypothetical pr...    25   7.2  

>U97549-9|AAB52849.2|  472|Caenorhabditis elegans Hypothetical
           protein F15A8.7 protein.
          Length = 472

 Score = 31.9 bits (69), Expect = 0.083
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 51  EFEYKVSDPHT--GDHKSQHESRDGDVVKGYYSLHQPDGSERHVHYHGDHH 99
           +F  +V  PH   G H  + E  + ++  G +  H    +E   H H +HH
Sbjct: 393 KFLVEVLSPHILGGPHSHEEEHSNIEIGSGSHEAHAHSATEHGAHNHSEHH 443


>U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical
           protein C01F4.2a protein.
          Length = 986

 Score = 29.5 bits (63), Expect = 0.44
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 68  HESRDGDVVKGYYSLHQPDGSERHVHYHGDH-HSG 101
           HES  G ++  + +  + D S RH H HGDH H G
Sbjct: 753 HESHPGVLLSPFPATLEEDSSPRH-HRHGDHSHIG 786


>U70845-2|AAB09100.1|  102|Caenorhabditis elegans Hypothetical
           protein F22H10.2 protein.
          Length = 102

 Score = 29.1 bits (62), Expect = 0.59
 Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 62  GDHKSQHESRDGDVVKGYYSLHQPDGSERHVHYHGDHHSG 101
           G H   H      ++ G    H   G   H H+HG HH G
Sbjct: 56  GHHHGHHHHHHHGLLHGLG--HALTGGHHHHHHHGGHHFG 93


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 4/42 (9%)

Query: 60  HTGDHKSQHESRDGDVVKGYYSLHQPDGSERHVHYHGDHHSG 101
           H G H + + +  G    G +  H P   E H H HGDHH G
Sbjct: 612 HHGHHGAGYGAHHGH--HGAHHHHAPH-HEHHEH-HGDHHHG 649



 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 1/42 (2%)

Query: 60  HTGDHKSQHESRDGDVVKGYYSLHQPDGSERHVHYHGDHHSG 101
           H   H   HE   GD   G + +H       H   H  HH G
Sbjct: 632 HHAPHHEHHEHH-GDHHHGSHGVHHGHHGTHHSLAHHGHHGG 672



 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/40 (32%), Positives = 17/40 (42%), Gaps = 1/40 (2%)

Query: 60  HTGDHKSQHESRDGDVVKGYYSLHQPDGSERHVHYHGDHH 99
           H G H  +H    G    GY + H   G+  H   H +HH
Sbjct: 602 HHGHH-GEHGVHHGHHGAGYGAHHGHHGAHHHHAPHHEHH 640


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 83  HQPDGSERHVHYHGDHH 99
           H+  G + H H+HG HH
Sbjct: 125 HKKHGRKEHDHHHGHHH 141


>U80445-9|AAB37799.1|  264|Caenorhabditis elegans Fk506-binding
          protein family protein5, isoform a protein.
          Length = 264

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 53 EYKVSDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSE 89
          E K+  P   + K   +S+DGDV+  +Y L   DG E
Sbjct: 31 EIKIIRPIKAE-KCPIKSQDGDVLDQWYKLSDKDGKE 66


>U80445-8|AAK68259.1|  300|Caenorhabditis elegans Fk506-binding
           protein family protein5, isoform b protein.
          Length = 300

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 53  EYKVSDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSE 89
           E K+  P   + K   +S+DGDV+  +Y L   DG E
Sbjct: 67  EIKIIRPIKAE-KCPIKSQDGDVLDQWYKLSDKDGKE 102


>U40799-9|AAA81488.2| 1292|Caenorhabditis elegans Hypothetical
           protein F42C5.10 protein.
          Length = 1292

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 64  HKSQHESRDGDVVKGYYSLH-QPDGSERHVHYHGDHHS 100
           H  +H   D   V+ ++  H   DGSE   HYH D ++
Sbjct: 933 HDQEHHHYDTVHVQHHHHHHYHTDGSEHVHHYHQDENA 970


>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
           protein Y47D3B.7 protein.
          Length = 1113

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/42 (26%), Positives = 16/42 (38%)

Query: 54  YKVSDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSERHVHYH 95
           Y  +  H   + S ++   G     YYS H       H H+H
Sbjct: 194 YTEAMEHINGYMSPYDQAQGPSGPSYYSQHHQSPPPHHHHHH 235


>U23523-6|AAC46561.1|   86|Caenorhabditis elegans Hypothetical
           protein F53A9.6 protein.
          Length = 86

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 78  GYYSLHQPDGSERHVHYHGDHHSG 101
           G+   H    S  H  +HG HH G
Sbjct: 45  GHMDTHHHHDSHHHGGHHGGHHGG 68


>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 1/41 (2%)

Query: 60  HTGDHKSQH-ESRDGDVVKGYYSLHQPDGSERHVHYHGDHH 99
           H G H   H   R G     ++  H      RH H+H  HH
Sbjct: 381 HGGRHGPPHCPGRHGHHGPPHHHHHDGRSPSRHGHHHHHHH 421


>Z81556-1|CAB04524.1|  965|Caenorhabditis elegans Hypothetical
           protein F58G1.1 protein.
          Length = 965

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/37 (35%), Positives = 15/37 (40%)

Query: 65  KSQHESRDGDVVKGYYSLHQPDGSERHVHYHGDHHSG 101
           K   + R   V+KG        G ERH    G HH G
Sbjct: 336 KGLEKDRCAAVIKGLDCYSTYGGRERHHKIEGIHHEG 372


>U23523-4|AAC46557.1|   83|Caenorhabditis elegans Hypothetical
          protein F53A9.2 protein.
          Length = 83

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 2/42 (4%)

Query: 60 HTGDHKSQHESRD--GDVVKGYYSLHQPDGSERHVHYHGDHH 99
          H G H   H      G  + G++  H       H H+H  HH
Sbjct: 42 HHGHHHHHHSFLHELGHALTGHHHHHHGHHFGHHHHHHHGHH 83


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.314    0.132    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,028,708
Number of Sequences: 27539
Number of extensions: 63684
Number of successful extensions: 132
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 101
Number of HSP's gapped (non-prelim): 33
length of query: 101
length of database: 12,573,161
effective HSP length: 70
effective length of query: 31
effective length of database: 10,645,431
effective search space: 330008361
effective search space used: 330008361
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)