Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000255-TA|BGIBMGA000255-PA|IPR000618|Insect cuticle
protein
         (101 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43387| Best HMM Match : DUF1103 (HMM E-Value=1.5e-07)               29   0.67 
SB_47874| Best HMM Match : Keratin_B2 (HMM E-Value=4.9)                27   2.1  
SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   2.7  
SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   3.6  
SB_39431| Best HMM Match : Ribosomal_L37ae (HMM E-Value=1.9)           26   4.7  
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)               26   4.7  
SB_46908| Best HMM Match : MORN (HMM E-Value=2.52234e-44)              26   6.3  
SB_34999| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   6.3  
SB_45143| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.3  
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)                   25   8.3  
SB_19241| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.3  
SB_9814| Best HMM Match : DUF413 (HMM E-Value=4.4)                     25   8.3  

>SB_43387| Best HMM Match : DUF1103 (HMM E-Value=1.5e-07)
          Length = 644

 Score = 29.1 bits (62), Expect = 0.67
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 5/42 (11%)

Query: 63  DHKSQH-ESRDGDVVKGYYSLHQPDGSERHVH----YHGDHH 99
           D+K  H  SRD D    +     PD  ++H+H    Y+ DHH
Sbjct: 354 DNKDYHIHSRDPDNKDHHIHSKDPDNKDQHIHSRDPYNKDHH 395



 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 58  DPHTGDHKSQHESRDGDVVKGYYSLHQPDGSERHVH 93
           DP+  DH     S+D D    +     PD  +RH+H
Sbjct: 484 DPNNKDHHIH--SKDPDNKDHHIRSKDPDNKDRHIH 517



 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 5/42 (11%)

Query: 63  DHKSQH-ESRDGDVVKGYYSLHQPDGSERHVHY----HGDHH 99
           D+K  H  S+D D +  +     PD  + H+H     + DHH
Sbjct: 114 DNKDHHIHSKDPDNMDHHIHSKDPDNKDHHIHSKDPDNKDHH 155



 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 5/42 (11%)

Query: 63  DHKSQH-ESRDGDVVKGYYSLHQPDGSERHVHY----HGDHH 99
           D+K  H  S+D D +  +     PD  + H+H     + DHH
Sbjct: 306 DNKDHHIHSKDPDNMDHHIHSKDPDNKDHHIHSKDPDNKDHH 347


>SB_47874| Best HMM Match : Keratin_B2 (HMM E-Value=4.9)
          Length = 253

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)

Query: 57  SDPHTGDHKSQHESRDGDV-VKGYYSLHQPDGSERHVHYHGDHH 99
           +D H   H   H   + D  V+ +   H    ++ HV  H DHH
Sbjct: 182 TDHHVQSHTDHHVLSNTDHNVQSHTDHHVLSNTDHHVQSHTDHH 225


>SB_4239| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 228

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 9/43 (20%)

Query: 53 EYKVSDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSERHVHYH 95
          EY +   + GD  + H+S       GYYS HQ D    H  +H
Sbjct: 33 EYSID--YVGDQSAHHDS-------GYYSSHQNDYHHGHKRHH 66


>SB_9084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 166

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/36 (30%), Positives = 14/36 (38%)

Query: 64 HKSQHESRDGDVVKGYYSLHQPDGSERHVHYHGDHH 99
          H   H   D       +  HQ    + H H+H DHH
Sbjct: 7  HHHDHHHHDHHHHDHQHHDHQHHDHQHHDHHHHDHH 42


>SB_39431| Best HMM Match : Ribosomal_L37ae (HMM E-Value=1.9)
          Length = 186

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 75  VVKGYYSLHQPDGSERHVHYHGDH 98
           + KG   +H P  SE+ VH H +H
Sbjct: 153 LAKGDDEVHDPKPSEQVVHLHAEH 176


>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
          Length = 358

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)

Query: 85  PDGSERHVHYHGDHH 99
           P G+ RH H+H  HH
Sbjct: 128 PTGNHRHYHHHYHHH 142


>SB_46908| Best HMM Match : MORN (HMM E-Value=2.52234e-44)
          Length = 241

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 71  RDGDVVKGYYSLHQPDGSERHVHYHGDHHSG 101
           +DG V +G +  H+  G  + ++ +GD + G
Sbjct: 72  KDGSVYEGSFHEHKKHGEGKMIYINGDVYEG 102


>SB_34999| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 2/27 (7%)

Query: 62  GDHKSQHESRDG--DVVKGYYSLHQPD 86
           GDH+S HE + G  D+ +G ++  +P+
Sbjct: 106 GDHQSHHEEKRGLQDLAQGLHACARPE 132


>SB_45143| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 119

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 66 SQHESRDGDVVKGYYSLHQPDGSERHVH 93
          S+H+  DGDV     S H PD  +RH H
Sbjct: 22 SRHDHGDGDVKIKVASRHDPD--KRHDH 47


>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1283

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 49   KYEFEYKVSDPHT-GDHKSQHESRDGDVVKGYYSLHQPDGSERHVHYHG 96
            +Y  E      HT  DH+      +  V + Y + H P    R+   HG
Sbjct: 965  RYRIERSHESVHTPNDHRRSSTRSEHSVQRRYSNEHSPSRKRRNSDNHG 1013


>SB_19241| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/18 (50%), Positives = 12/18 (66%)

Query: 78 GYYSLHQPDGSERHVHYH 95
          GY  L+QP G+  HV+ H
Sbjct: 46 GYGKLYQPKGTTEHVYAH 63


>SB_9814| Best HMM Match : DUF413 (HMM E-Value=4.4)
          Length = 422

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 10/22 (45%), Positives = 12/22 (54%)

Query: 53  EYKVSDPHTGDHKSQHESRDGD 74
           +Y VSD H GD     + R GD
Sbjct: 397 DYDVSDDHGGDDYDDSDDRGGD 418


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.132    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,845,251
Number of Sequences: 59808
Number of extensions: 95872
Number of successful extensions: 178
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 166
Number of HSP's gapped (non-prelim): 18
length of query: 101
length of database: 16,821,457
effective HSP length: 71
effective length of query: 30
effective length of database: 12,575,089
effective search space: 377252670
effective search space used: 377252670
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 53 (25.4 bits)