GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000255-TA|BGIBMGA000255-PA|IPR000618|Insect cuticle
protein
         (101 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       24   0.27 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    19   7.6  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    19   7.6  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    19   7.6  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 24.2 bits (50), Expect = 0.27
 Identities = 13/44 (29%), Positives = 20/44 (45%)

Query: 54  YKVSDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSERHVHYHGD 97
           Y V   +   ++ +  + DG +V  Y  +   DGS R V Y  D
Sbjct: 195 YVVEGRNYRKYRVEERTSDGFIVGEYGVVSHDDGSLRGVRYTAD 238


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 6/12 (50%), Positives = 7/12 (58%)

Query: 84  QPDGSERHVHYH 95
           QP     HVH+H
Sbjct: 126 QPPTDNSHVHHH 137


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 83  HQPDGSERHVHYHG 96
           HQP   ++H+ Y G
Sbjct: 179 HQPHHQQQHMMYGG 192


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 19.4 bits (38), Expect = 7.6
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 83  HQPDGSERHVHYHG 96
           HQP   ++H+ Y G
Sbjct: 181 HQPHHQQQHMMYGG 194


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.132    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,684
Number of Sequences: 317
Number of extensions: 721
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 101
length of database: 114,650
effective HSP length: 48
effective length of query: 53
effective length of database: 99,434
effective search space:  5270002
effective search space used:  5270002
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.1 bits)
S2: 38 (19.4 bits)