GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000255-TA|BGIBMGA000255-PA|IPR000618|Insect cuticle
protein
         (101 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    27   0.74 
SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|c...    26   1.3  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    26   1.3  
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    25   3.0  
SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces pom...    24   5.2  
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    23   6.9  
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    23   6.9  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    23   6.9  
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    23   9.1  

>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 26.6 bits (56), Expect = 0.74
 Identities = 12/45 (26%), Positives = 20/45 (44%)

Query: 55  KVSDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSERHVHYHGDHH 99
           K SD     H+S + +       G  + H    S++ +H+ G HH
Sbjct: 257 KSSDSSETSHESSNSNLKKSSESGSTNHHNNHESDKDLHHEGHHH 301



 Score = 26.2 bits (55), Expect = 0.98
 Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 9/46 (19%)

Query: 55  KVSDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSERHVHYHGDHHS 100
           K S+  + +H + HES D D       LH  +G   H H+H  HHS
Sbjct: 275 KSSESGSTNHHNNHES-DKD-------LHH-EGHHHHHHHHHHHHS 311


>SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 113

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 1/46 (2%)

Query: 50  YEFEYKVSDPHTGDHKSQHESRDGD-VVKGYYSLHQPDGSERHVHY 94
           Y  E K++  ++  ++   +  +G      YY  H P+G+  HV+Y
Sbjct: 68  YNVEAKINHSYSAFYRPFTKRENGLWYANPYYMQHGPNGNYHHVYY 113


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 1.3
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 50  YEFEYKVSDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSERHVHYHGDHHSG 101
           Y  +Y  S P T  + S+ ++   D V G    +   GS  H   HG  H G
Sbjct: 170 YGEDYSQSYP-TDTYGSRQKATPSDTVGGGAYDYSSSGSHTHGGSHGTEHRG 220


>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 24.6 bits (51), Expect = 3.0
 Identities = 10/36 (27%), Positives = 19/36 (52%)

Query: 65  KSQHESRDGDVVKGYYSLHQPDGSERHVHYHGDHHS 100
           KS    R  D+++G  +LH P+ +   +++    HS
Sbjct: 245 KSHWRERIWDLIQGMVTLHIPEQAAWTIYFEWQDHS 280


>SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 79

 Score = 23.8 bits (49), Expect = 5.2
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 53 EYKVSDPHTGDHKSQHESRDGDVVKGY-YSLHQPDGS 88
          E +  + H G+   +H+   G+V  GY  ++H P+ S
Sbjct: 28 EKEYLEEHEGEVGEEHQKNTGNVRGGYKAAMHNPNVS 64


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 50  YEFEYKVSDPHTGDHKSQHESRDGDVVKGYYSLH 83
           +E E +VS P+       H+  +  V K Y++LH
Sbjct: 142 FEVELRVSHPNWAFVSWSHDDLNELVDKSYHNLH 175


>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 76  VKGYYSLHQPDGSERHVHYHGDHH 99
           ++   SL Q + SE  +HY   HH
Sbjct: 89  IRTIISLRQEEYSEEDLHYFTKHH 112


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 23.4 bits (48), Expect = 6.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 72  DGDVVKGYYSLHQPDGSERHVHY 94
           DGD    Y+     D +ERH++Y
Sbjct: 429 DGDFGNVYFLATLKDSTERHLYY 451


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 23.0 bits (47), Expect = 9.1
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 49 KYEFEYKVSDPH 60
          KY FE+ V DPH
Sbjct: 28 KYHFEFIVPDPH 39


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.132    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 368,046
Number of Sequences: 5004
Number of extensions: 11051
Number of successful extensions: 24
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 15
Number of HSP's gapped (non-prelim): 10
length of query: 101
length of database: 2,362,478
effective HSP length: 63
effective length of query: 38
effective length of database: 2,047,226
effective search space: 77794588
effective search space used: 77794588
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 47 (23.0 bits)