Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000254-TA|BGIBMGA000254-PA|IPR000618|Insect cuticle
protein
         (279 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|c...    27   2.3  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    27   2.3  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    27   3.9  
SPCC1020.10 |oca2||serine/threonine protein kinase Oca2 |Schizos...    26   5.2  

>SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 113

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 226 PKYEFEYKIEDHHTGDKKSQHETRDGD-VVKGYYMLHEPDGSIRHVEY 272
           P Y  E KI   ++   +   +  +G      YYM H P+G+  HV Y
Sbjct: 66  PLYNVEAKINHSYSAFYRPFTKRENGLWYANPYYMQHGPNGNYHHVYY 113


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/56 (25%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 21  HGHGHAVSSQSIVLHT-SHGHEHQGETPAHHQILTTQHFEHGGHYDLGHHKVQHHG 75
           H H H  S +    H  +H H H+      H+ ++ Q+ ++  H    H     HG
Sbjct: 530 HEHTHENSQEHHHEHNHNHDHIHKYNEKCDHESISLQNLDNDHHCHHHHENHNMHG 585


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 44  GETPAHHQILTTQHFEHGGHYDLGHHKVQHHGY 76
           G T  H+   + +   H GH+   HH   HH +
Sbjct: 280 GSTNHHNNHESDKDLHHEGHHHHHHHHHHHHSH 312


>SPCC1020.10 |oca2||serine/threonine protein kinase Oca2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 11/38 (28%), Positives = 19/38 (50%)

Query: 21  HGHGHAVSSQSIVLHTSHGHEHQGETPAHHQILTTQHF 58
           HGH  ++S +S+V +    H+   +   HH  L  + F
Sbjct: 229 HGHSGSLSLKSLVPNHHDKHDKHDKHEKHHSSLDLRRF 266


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.133    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,039,059
Number of Sequences: 5004
Number of extensions: 34079
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 65
Number of HSP's gapped (non-prelim): 7
length of query: 279
length of database: 2,362,478
effective HSP length: 72
effective length of query: 207
effective length of database: 2,002,190
effective search space: 414453330
effective search space used: 414453330
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)