Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000254-TA|BGIBMGA000254-PA|IPR000618|Insect cuticle
protein
         (279 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zin...    34   0.092
At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zin...    34   0.092
At1g67870.1 68414.m07750 glycine-rich protein contains non-conse...    34   0.092
At3g63100.1 68416.m07087 glycine-rich protein                          33   0.21 
At1g14440.2 68414.m01713 zinc finger homeobox family protein / Z...    31   0.86 
At1g14440.1 68414.m01712 zinc finger homeobox family protein / Z...    31   0.86 
At2g04620.1 68415.m00470 cation efflux family protein potential ...    31   1.1  
At4g21450.2 68417.m03102 vesicle-associated membrane family prot...    29   2.6  
At4g21450.1 68417.m03103 vesicle-associated membrane family prot...    29   2.6  
At3g58810.2 68416.m06555 zinc transporter, putative similar to z...    29   2.6  
At3g58810.1 68416.m06554 zinc transporter, putative similar to z...    29   2.6  
At3g23790.1 68416.m02990 AMP-binding protein, putative similar t...    29   4.6  
At4g29230.1 68417.m04181 no apical meristem (NAM) family protein...    28   8.0  

>At2g46800.2 68415.m05840 zinc transporter (ZAT) identical to zinc
           transporter ZAT [Arabidopsis thaliana]
           gi|4206640|gb|AAD11757; member of the cation diffusion
           facilitator (CDF) family, or cation efflux (CE) family,
           PMID:11500563
          Length = 398

 Score = 34.3 bits (75), Expect = 0.092
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 11/63 (17%)

Query: 20  GHGHGHAVSSQSIVLHTSHGHEHQGETPAHHQILTTQHFEHGGH---YDLGHHKVQHHGY 76
           GH HGH+           HGH+H   +   H +  T H  H  H   +  GH + +HH +
Sbjct: 181 GHDHGHSHGHGH-----GHGHDHHNHS---HGVTVTTHHHHHDHEHGHSHGHGEDKHHAH 232

Query: 77  TQV 79
             V
Sbjct: 233 GDV 235


>At2g46800.1 68415.m05839 zinc transporter (ZAT) identical to zinc
           transporter ZAT [Arabidopsis thaliana]
           gi|4206640|gb|AAD11757; member of the cation diffusion
           facilitator (CDF) family, or cation efflux (CE) family,
           PMID:11500563
          Length = 398

 Score = 34.3 bits (75), Expect = 0.092
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 11/63 (17%)

Query: 20  GHGHGHAVSSQSIVLHTSHGHEHQGETPAHHQILTTQHFEHGGH---YDLGHHKVQHHGY 76
           GH HGH+           HGH+H   +   H +  T H  H  H   +  GH + +HH +
Sbjct: 181 GHDHGHSHGHGH-----GHGHDHHNHS---HGVTVTTHHHHHDHEHGHSHGHGEDKHHAH 232

Query: 77  TQV 79
             V
Sbjct: 233 GDV 235


>At1g67870.1 68414.m07750 glycine-rich protein contains
           non-consensus GG donor splice site at exon2; modeled to
           est match.
          Length = 279

 Score = 34.3 bits (75), Expect = 0.092
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 18  QDGHGHGHAVSSQSIVLHTSHGHEHQGETPAHHQILT-TQHFEHGGHYDLGHHKVQHHG 75
           Q GHG  H      +     HG EHQG     HQ +   QH    G    G H++QH G
Sbjct: 171 QGGHGMQHQ-GMHGMQHQGGHGMEHQGGHGMQHQDMHGMQHQGRHGMQHQGGHEMQHQG 228



 Score = 31.5 bits (68), Expect = 0.65
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 1/42 (2%)

Query: 35  HTSHGHEHQG-ETPAHHQILTTQHFEHGGHYDLGHHKVQHHG 75
           H  HG +HQG     HH I   QH    G    G H +QH G
Sbjct: 123 HEIHGMKHQGGHGIQHHDIHGMQHQGGHGMQHQGMHGMQHQG 164


>At3g63100.1 68416.m07087 glycine-rich protein 
          Length = 199

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 14/58 (24%)

Query: 20  GHGHGHAVSSQSIVLHTSHGHEHQ-GETPAHHQILTTQHFEHGGHYDLGHHKVQHHGY 76
           GHGHGH         H  HG +H+ G    HH+        HG H+  GH + +  G+
Sbjct: 97  GHGHGHGHG------HRRHGRDHRHGRDRGHHR-------GHGHHHHRGHRRGRGRGH 141


>At1g14440.2 68414.m01713 zinc finger homeobox family protein /
          ZF-HD homeobox family protein
          Length = 312

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 11/56 (19%)

Query: 35 HTSHGHEHQGET---PAHHQILTTQ------HFE-HGGHYDLGHHKVQHH-GYTQV 79
          H  H H+H       P H+   TTQ      H   HG +YD  HH+  HH GY  +
Sbjct: 27 HMIHHHDHHAANSAPPTHNNNNTTQPPPMPLHGNGHGNNYDHHHHQDPHHVGYNAI 82


>At1g14440.1 68414.m01712 zinc finger homeobox family protein /
          ZF-HD homeobox family protein
          Length = 312

 Score = 31.1 bits (67), Expect = 0.86
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 11/56 (19%)

Query: 35 HTSHGHEHQGET---PAHHQILTTQ------HFE-HGGHYDLGHHKVQHH-GYTQV 79
          H  H H+H       P H+   TTQ      H   HG +YD  HH+  HH GY  +
Sbjct: 27 HMIHHHDHHAANSAPPTHNNNNTTQPPPMPLHGNGHGNNYDHHHHQDPHHVGYNAI 82


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 21  HGHGHAVSSQSIVLHTSHGHEHQGETPAHHQILTTQHFEHGGHYDLGHHKVQH 73
           H H H   S     H  H   H+ E   HHQ   +   E    +D  HH   H
Sbjct: 556 HSHSHQSHSHKNEEHHQHSDSHKHEE--HHQHSDSHKHEEHHEHDHHHHSHSH 606



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 7/56 (12%)

Query: 21  HGHGHAVSSQSIVLHTSHGHE-HQGETPAHHQILTT-QHFEHGGHYDLGHHKVQHH 74
           H H H  S  +   H SH H+ H  +   HHQ   + +H EH  H D  H   +HH
Sbjct: 545 HHHAHGGSGCT---H-SHSHQSHSHKNEEHHQHSDSHKHEEHHQHSD-SHKHEEHH 595



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 16/60 (26%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 16  KPQDGHGHGHAVSSQSIVLHT-SHGHEHQGETPAHHQILTTQHFEHGGHYDLGHHKVQHH 74
           K ++ H H  +   +    H+ SH HE   E   HH   + +H E   ++D  H    H+
Sbjct: 566 KNEEHHQHSDSHKHEEHHQHSDSHKHEEHHEHDHHHHSHSHKHEECNHNHDHEHQSHSHN 625



 Score = 29.1 bits (62), Expect = 3.5
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 19  DGHGHGHAVSSQSIVLHTSHGHEHQGETPAHHQILTTQHFEHGGHYDLGHHKVQH 73
           D H H H+   +    + +H HEHQ  +  +H+     H  H  H      K +H
Sbjct: 598 DHHHHSHSHKHEEC--NHNHDHEHQSHS-HNHEECNHNHDHHSDHQPEKSEKKEH 649


>At4g21450.2 68417.m03102 vesicle-associated membrane family
          protein / VAMP family protein similar to VAP27
          GI:6688926 [Nicotiana plumbaginifolia]
          Length = 212

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 24 GHAVSSQSIVLHTSHGHEHQGETPAHHQI 52
          G + SS S  LH  H H HQ     HHQ+
Sbjct: 44 GASSSSTSSHLHNHHQHHHQHHHQHHHQL 72


>At4g21450.1 68417.m03103 vesicle-associated membrane family
          protein / VAMP family protein similar to VAP27
          GI:6688926 [Nicotiana plumbaginifolia]
          Length = 295

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 24 GHAVSSQSIVLHTSHGHEHQGETPAHHQI 52
          G + SS S  LH  H H HQ     HHQ+
Sbjct: 44 GASSSSTSSHLHNHHQHHHQHHHQHHHQL 72


>At3g58810.2 68416.m06555 zinc transporter, putative similar to zinc
           transporter 4; ZnT4 [Mus musculus]
           gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
           [Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
           the cation diffusion facilitator (CDF) family, or cation
           efflux (CE) family, PMID:11500563
          Length = 393

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 11/44 (25%)

Query: 20  GHGHGHAVSSQSIVLHTSHGHEHQGETPAHHQILTTQHFEHGGH 63
           GHGHGH+  +        HGH H       H I  T+H    GH
Sbjct: 201 GHGHGHSHDN-------GHGHSHD----HGHGIAATEHHHDSGH 233


>At3g58810.1 68416.m06554 zinc transporter, putative similar to zinc
           transporter 4; ZnT4 [Mus musculus]
           gi|2582990|gb|AAB82593; similar to zinc transporter ZAT
           [Arabidopsis thaliana] gi|4206640|gb|AAD11757; member of
           the cation diffusion facilitator (CDF) family, or cation
           efflux (CE) family, PMID:11500563
          Length = 432

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 11/44 (25%)

Query: 20  GHGHGHAVSSQSIVLHTSHGHEHQGETPAHHQILTTQHFEHGGH 63
           GHGHGH+  +        HGH H       H I  T+H    GH
Sbjct: 240 GHGHGHSHDN-------GHGHSHD----HGHGIAATEHHHDSGH 272


>At3g23790.1 68416.m02990 AMP-binding protein, putative similar to
           AMP-binding protein GB:CAA96521 from [Brassica napus]
           (Plant Mol. Biol. (1997) 33 (5), 911-922); contains Pfam
           AMP-binding enzyme domain PF00501; identical to cDNA
           acyl-CoA synthetase-like protein  GI:20799732
          Length = 722

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 5/39 (12%)

Query: 225 HPKYEFEYKIEDHHTG-----DKKSQHETRDGDVVKGYY 258
           HP  + E+KI DH TG       K   + R   V+KGYY
Sbjct: 504 HPIKDTEFKIVDHETGTVLPPGSKGIVKVRGPPVMKGYY 542


>At4g29230.1 68417.m04181 no apical meristem (NAM) family protein
           similar to NAM family proteins GP|12751304|,
           GP|6223650|, GP|9758909 - Arabidopsis
           thaliana,PIR2:T04621
          Length = 498

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/39 (30%), Positives = 17/39 (43%)

Query: 18  QDGHGHGHAVSSQSIVLHTSHGHEHQGETPAHHQILTTQ 56
           Q  H H  + S+   + H  H H HQ +   HH    +Q
Sbjct: 342 QHRHRHQPSSSTSHHMAHDHHHHHHQQQQQRHHAFNISQ 380


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.133    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,490,794
Number of Sequences: 28952
Number of extensions: 187579
Number of successful extensions: 500
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 26
length of query: 279
length of database: 12,070,560
effective HSP length: 80
effective length of query: 199
effective length of database: 9,754,400
effective search space: 1941125600
effective search space used: 1941125600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)