GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000254-TA|BGIBMGA000254-PA|IPR000618|Insect cuticle
protein
         (279 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       31   0.007
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    25   0.47 
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    25   0.47 
AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B prot...    24   1.1  
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    21   7.7  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          21   7.7  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   7.7  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 31.5 bits (68), Expect = 0.007
 Identities = 15/44 (34%), Positives = 23/44 (52%)

Query: 232 YKIEDHHTGDKKSQHETRDGDVVKGYYMLHEPDGSIRHVEYHAD 275
           Y +E  +    + +  T DG +V  Y ++   DGS+R V Y AD
Sbjct: 195 YVVEGRNYRKYRVEERTSDGFIVGEYGVVSHDDGSLRGVRYTAD 238



 Score = 26.6 bits (56), Expect = 0.21
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 124 YKVEDPHTGDNKYQHETRDGDVVKGVYSLHEADGTIRTVEYSAD 167
           Y VE  +    + +  T DG +V     +   DG++R V Y+AD
Sbjct: 195 YVVEGRNYRKYRVEERTSDGFIVGEYGVVSHDDGSLRGVRYTAD 238


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 27  VSSQSIVLHTSHGHEHQGETPAHHQ-ILTTQHFEHGGHYDLGHHK 70
           +++QS+  H   GH  Q + P HHQ     QH  +GG      H+
Sbjct: 157 LTTQSMNNHHM-GHHMQEQHPQHHQPHHQQQHMMYGGQQGANMHQ 200


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 25.4 bits (53), Expect = 0.47
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 27  VSSQSIVLHTSHGHEHQGETPAHHQ-ILTTQHFEHGGHYDLGHHK 70
           +++QS+  H   GH  Q + P HHQ     QH  +GG      H+
Sbjct: 159 LTTQSMNNHHM-GHHMQEQHPQHHQPHHQQQHMMYGGQQGANMHQ 202


>AF227923-1|AAF36721.1|  351|Tribolium castaneum abdominal-B
           protein.
          Length = 351

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 1/19 (5%)

Query: 57  HFEHGGHY-DLGHHKVQHH 74
           H  H GH+    HH V HH
Sbjct: 322 HHHHAGHHIHAQHHVVNHH 340


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 118 PQYAFEYKVEDPHTGDNKYQ 137
           PQ+ F Y+    ++  N YQ
Sbjct: 209 PQFNFNYQYNQAYSNYNNYQ 228


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 118 PQYAFEYKVEDPHTGDNKYQ 137
           PQ+ F Y+    ++  N YQ
Sbjct: 229 PQFNFNYQYNQAYSNYNNYQ 248


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
          protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 13/56 (23%), Positives = 22/56 (39%)

Query: 21 HGHGHAVSSQSIVLHTSHGHEHQGETPAHHQILTTQHFEHGGHYDLGHHKVQHHGY 76
          HG+G   +S     ++  G+ H G T  H     +     G +     H+  + GY
Sbjct: 32 HGYGPLRTSYQHHFNSPAGNAHTGPTGTHDAGFPSPRGALGAYPFRPMHQNSYTGY 87


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.316    0.133    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 56,126
Number of Sequences: 317
Number of extensions: 2112
Number of successful extensions: 12
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 8
length of query: 279
length of database: 114,650
effective HSP length: 56
effective length of query: 223
effective length of database: 96,898
effective search space: 21608254
effective search space used: 21608254
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)