Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000254-TA|BGIBMGA000254-PA|IPR000618|Insect cuticle
protein
(279 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0214 - 1615519-1616775 34 0.15
01_07_0280 + 42452993-42453337,42453778-42453981 32 0.59
08_02_0707 - 20212190-20214592 30 2.4
03_03_0008 - 13674602-13674708,13675272-13675439,13676169-136767... 30 2.4
01_06_1312 - 36205549-36206649,36207558-36207883,36209083-362091... 30 2.4
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993... 29 3.1
05_01_0141 - 937428-937717,938483-938705 29 4.1
10_08_1052 - 22567937-22568329,22568436-22568669,22568787-225691... 28 7.2
02_01_0326 - 2230617-2230735,2231430-2231493,2231646-2231849,223... 28 7.2
09_06_0144 + 21149338-21150651 28 9.6
>05_01_0214 - 1615519-1616775
Length = 418
Score = 33.9 bits (74), Expect = 0.15
Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 6/49 (12%)
Query: 20 GHGHGHAVSSQSIVLHTSHGHEHQGETPAHHQILTTQHFEHGGHYDLGH 68
GHGHGH SH H+H G HH +H H H++ GH
Sbjct: 185 GHGHGHGHGHGH-----SHDHDHGGSDHDHHHHEDQEH-GHVHHHEDGH 227
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 31 SIVLHTSHGHEHQGETPAHHQILTTQHFEHGGH-YDLGHHKVQHHGY 76
+++L HGH H G H + +HGG +D HH+ Q HG+
Sbjct: 177 AVLLGHDHGHGH-GHGHGHGH---SHDHDHGGSDHDHHHHEDQEHGH 219
>01_07_0280 + 42452993-42453337,42453778-42453981
Length = 182
Score = 31.9 bits (69), Expect = 0.59
Identities = 20/57 (35%), Positives = 22/57 (38%), Gaps = 12/57 (21%)
Query: 18 QDGHGHGHAVSSQSIVLHTSHGHEHQGETPAHHQILTTQHFEHGGHYDLGHHKVQHH 74
Q GHGHGH H HGH H G H T ++ GG D G H
Sbjct: 19 QHGHGHGHG--------H-GHGHGHGGMRVESH---TDDYYSEGGEIDRGRRNNSMH 63
>08_02_0707 - 20212190-20214592
Length = 800
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 1/58 (1%)
Query: 21 HGHGHAVSSQSIVLHTSHGHEHQGETPAHHQILTTQHFEHGGHYDLGHHKVQHHGYTQ 78
H H H H G H G HH H H H+D + + H+ T+
Sbjct: 514 HSHVHGHEDHHNHDHALQGVNHNGACCEHHGDANKSH-HHDHHHDSSNEESHHNSLTE 570
>03_03_0008 - 13674602-13674708,13675272-13675439,13676169-13676787,
13676868-13677330,13677855-13678036,13678093-13678235,
13678315-13678423,13679000-13679456,13680490-13682473,
13682507-13682626,13682920-13682971
Length = 1467
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 5/53 (9%)
Query: 19 DGHGHGHAVSSQSIVLHTSHGHEHQGETPAHHQILTTQHFEHGGHY--DLGHH 69
DGH H + H H H + +H H++ GHY D GHH
Sbjct: 1296 DGHDRDHHRHDRR---HHGHDRRHHFDDRGYHYDDRGYHYDDRGHYFDDRGHH 1345
>01_06_1312 -
36205549-36206649,36207558-36207883,36209083-36209198,
36210472-36211577
Length = 882
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 4/37 (10%)
Query: 19 DGHGHGHAVSSQSIVL----HTSHGHEHQGETPAHHQ 51
DGHGHGH Q+ L SHG GE H +
Sbjct: 399 DGHGHGHGHDEQAASLAAAGAVSHGDVRGGERERHEE 435
>01_07_0122 -
41196081-41196205,41197561-41198245,41198961-41199329,
41199405-41199514,41200539-41200833
Length = 527
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 34 LHTSHGHEHQGETPAHHQILTTQHFEHGGHYDLGH 68
LH+ G E P HH H H GH D H
Sbjct: 334 LHSGGGSEAPSPAPMHHHGHHHHHHHHHGHEDSRH 368
>05_01_0141 - 937428-937717,938483-938705
Length = 170
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 21 HGHGHAVSSQSIVLHTSHGHEHQGETPAHHQILTTQHFEHGGHYDLGHHKVQHHG 75
HGHGH HG G H + H HGG GHH HHG
Sbjct: 103 HGHGHGGYGYG----GHHGGLFGGHHGHHGGLFGGHHGHHGGGLFGGHH--GHHG 151
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 34 LHTSHGHEHQGETPAHHQILTTQHFEHGGHYDLGHHKVQHHG 75
L HGH G H + H HGG + GHH HHG
Sbjct: 101 LSHGHGHGGYGYGGHHGGLFGGHHGHHGGLFG-GHH--GHHG 139
>10_08_1052 -
22567937-22568329,22568436-22568669,22568787-22569111,
22569239-22569484,22569576-22569916,22570070-22570150,
22570275-22570394,22570549-22570650,22570900-22571035,
22571210-22571362,22572605-22572906
Length = 810
Score = 28.3 bits (60), Expect = 7.2
Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 3/39 (7%)
Query: 29 SQSIVLHTSHGHEHQGETPAHHQILTTQHFEHGGHYDLG 67
S H H H Q T HH QH EH HY +G
Sbjct: 754 SSQATTHYYHHHHEQTTTTTHHHY--HQH-EHMSHYHMG 789
>02_01_0326 -
2230617-2230735,2231430-2231493,2231646-2231849,
2231945-2232016,2232293-2232458,2232543-2232758,
2232873-2232949,2233056-2233151,2233237-2233280,
2233435-2233522,2233805-2233886,2233961-2234091,
2234264-2234350,2234804-2234887,2234985-2235144,
2235251-2235414,2235757-2235762,2235823-2235879,
2236159-2236278,2236387-2236496,2236587-2236689,
2236789-2236842,2237106-2237168,2237258-2237325,
2237412-2237469,2237684-2237750,2238233-2238309,
2238433-2238516,2238652-2238828,2239010-2239144
Length = 1010
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 20 GHGHGHAVSSQSIVLH-TSHGHEHQGETPAHHQILTTQ 56
GHG GHA + +V H + GH+ T A + TT+
Sbjct: 34 GHGFGHATRALEVVRHLIAAGHDVHVVTGAPEFVFTTE 71
>09_06_0144 + 21149338-21150651
Length = 437
Score = 27.9 bits (59), Expect = 9.6
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 19 DGHGHGHAVSSQSIVLHTSH 38
D HGHG ++ +IV+H +H
Sbjct: 212 DSHGHGDGGAADNIVIHKAH 231
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.133 0.411
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,042,490
Number of Sequences: 37544
Number of extensions: 244449
Number of successful extensions: 657
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 637
Number of HSP's gapped (non-prelim): 21
length of query: 279
length of database: 14,793,348
effective HSP length: 81
effective length of query: 198
effective length of database: 11,752,284
effective search space: 2326952232
effective search space used: 2326952232
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)
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