GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000254-TA|BGIBMGA000254-PA|IPR000618|Insect cuticle
protein
         (279 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    28   0.080
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                26   0.43 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.3  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 28.3 bits (60), Expect = 0.080
 Identities = 15/54 (27%), Positives = 18/54 (33%), Gaps = 7/54 (12%)

Query: 20  GHGHGHAVSSQSIVLHTSHGHEHQGETPAHHQILTTQHFEHGGHYDLGHHKVQH 73
           GHGH H       +  T H H     TP H       H  +     +GH    H
Sbjct: 420 GHGHSH-------IHATPHHHHSHAATPHHQHSTPLAHSSYPAAIQIGHTPHHH 466



 Score = 27.9 bits (59), Expect = 0.11
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)

Query: 35  HT-SHGHEHQGETPAHHQI-LTTQHFEH 60
           HT  HGH H   TP HH     T H +H
Sbjct: 417 HTMGHGHSHIHATPHHHHSHAATPHHQH 444



 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/13 (61%), Positives = 8/13 (61%)

Query: 35  HTSHGHEHQGETP 47
           HT H H H  ETP
Sbjct: 461 HTPHHHPHPPETP 473


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 16/44 (36%), Positives = 19/44 (43%), Gaps = 6/44 (13%)

Query: 35  HTSHGHEHQGETPAHHQILTTQHFEHGGHYDLGHHKVQHHGYTQ 78
           H S  H H+G +P HH     QH  H     +G     HH  TQ
Sbjct: 322 HPSQYHPHRGSSP-HH-----QHGNHTMGPTMGPPHHHHHHQTQ 359


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 222  YYTHPKYEFEYKIEDHHTGDKKSQHETRDGDVVK 255
            YY  P    EYK+++ H    + + + +  D  K
Sbjct: 1068 YYGVPHSTLEYKVKERHLMRPRKRDQKQSDDKTK 1101


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.411 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,673
Number of Sequences: 429
Number of extensions: 2094
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 279
length of database: 140,377
effective HSP length: 57
effective length of query: 222
effective length of database: 115,924
effective search space: 25735128
effective search space used: 25735128
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)