GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000253-TA|BGIBMGA000253-PA|IPR000618|Insect cuticle
protein
         (119 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       25   0.15 
DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8 prot...    23   1.1  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    21   3.2  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    20   5.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    19   9.8  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 25.4 bits (53), Expect = 0.15
 Identities = 13/44 (29%), Positives = 21/44 (47%)

Query: 72  YKVSDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSIRHVDYHGD 115
           Y V   +   ++ +  + DG +V  Y  +   DGS+R V Y  D
Sbjct: 195 YVVEGRNYRKYRVEERTSDGFIVGEYGVVSHDDGSLRGVRYTAD 238


>DQ659248-1|ABG47446.1|  496|Tribolium castaneum chitinase 8
           protein.
          Length = 496

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)

Query: 102 QPDGSIRHVDYHGDKHSG 119
           Q DG++RH+D + D  +G
Sbjct: 64  QADGNVRHLDEYLDVDAG 81


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.0 bits (42), Expect = 3.2
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 102 QPDGSIRHVDY 112
           QPD +I H DY
Sbjct: 137 QPDNAIEHSDY 147


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 5.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 25  HGHAFSSQHISRHD 38
           +GHAF+    S+HD
Sbjct: 257 YGHAFTLVDASQHD 270


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 19.4 bits (38), Expect = 9.8
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 15  ATAQYGHDQSHGHAFSSQHISRHDGPA 41
           AT+Q   D SH H   +  + + +G A
Sbjct: 123 ATSQPPTDNSHVHHHQTSLLGKVEGAA 149


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.134    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,044
Number of Sequences: 317
Number of extensions: 965
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 119
length of database: 114,650
effective HSP length: 50
effective length of query: 69
effective length of database: 98,800
effective search space:  6817200
effective search space used:  6817200
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)
S2: 38 (19.4 bits)