GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000253-TA|BGIBMGA000253-PA|IPR000618|Insect cuticle
protein
         (119 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|c...    26   1.4  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    25   2.4  
SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces pom...    24   7.4  
SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein P...    23   9.7  

>SPBC15D4.12c |mug98||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 113

 Score = 26.2 bits (55), Expect = 1.4
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 66  PKYEFEYKVSDPHTGDHKSQHESRDGD-VVKGYYSLHQPDGSIRHVDY 112
           P Y  E K++  ++  ++   +  +G      YY  H P+G+  HV Y
Sbjct: 66  PLYNVEAKINHSYSAFYRPFTKRENGLWYANPYYMQHGPNGNYHHVYY 113


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.4 bits (53), Expect = 2.4
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 68  YEFEYKVSDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSIRHVDYHGDKHSG 119
           Y  +Y  S P T  + S+ ++   D V G    +   GS  H   HG +H G
Sbjct: 170 YGEDYSQSYP-TDTYGSRQKATPSDTVGGGAYDYSSSGSHTHGGSHGTEHRG 220


>SPAC11D3.01c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 79

 Score = 23.8 bits (49), Expect = 7.4
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 71  EYKVSDPHTGDHKSQHESRDGDVVKGY-YSLHQPDGS 106
           E +  + H G+   +H+   G+V  GY  ++H P+ S
Sbjct: 28  EKEYLEEHEGEVGEEHQKNTGNVRGGYKAAMHNPNVS 64


>SPAC27E2.07 |pvg2|mug53|galactose residue biosynthesis protein
           Pvg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 389

 Score = 23.4 bits (48), Expect = 9.7
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 68  YEFEYKVSDPHTGDHKSQHESRDGDVVKGYYSLH 101
           +E E +VS P+       H+  +  V K Y++LH
Sbjct: 142 FEVELRVSHPNWAFVSWSHDDLNELVDKSYHNLH 175


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.134    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 525,076
Number of Sequences: 5004
Number of extensions: 16545
Number of successful extensions: 36
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 4
length of query: 119
length of database: 2,362,478
effective HSP length: 65
effective length of query: 54
effective length of database: 2,037,218
effective search space: 110009772
effective search space used: 110009772
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 48 (23.4 bits)