GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000253-TA|BGIBMGA000253-PA|IPR000618|Insect cuticle
protein
         (119 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0214 - 1615519-1616775                                           27   5.3  
03_03_0191 + 15302384-15302422,15302780-15303246,15303356-153035...    27   5.3  
11_03_0010 - 8922361-8922375,8923888-8924610                           26   7.0  
05_03_0263 + 11234850-11235044,11235413-11237341                       26   7.0  
08_02_1446 + 27156449-27156790,27157961-27158042,27158698-271587...    26   9.2  

>05_01_0214 - 1615519-1616775
          Length = 418

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/38 (34%), Positives = 15/38 (39%)

Query: 1   MFSKIVCLLGVVAVATAQYGHDQSHGHAFSSQHISRHD 38
           MF+     L V  +     GHD  HGH     H   HD
Sbjct: 162 MFAVSAFGLFVNIIMAVLLGHDHGHGHGHGHGHGHSHD 199


>03_03_0191 +
           15302384-15302422,15302780-15303246,15303356-15303563,
           15303723-15303794,15304295-15304430,15304619-15304890,
           15305197-15305345,15305818-15305947,15306244-15306258
          Length = 495

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)

Query: 69  EFEYKVSDPHTGDHKSQHESRDGDV-VKGYYSLHQPDGSIR-HVDYHG 114
           +FE K+ D     + S+HE+  G V +    S H+ D   + HVD  G
Sbjct: 16  QFEGKLKDGFARSNNSEHENGAGTVSISSKKSKHRVDSEKKPHVDISG 63


>11_03_0010 - 8922361-8922375,8923888-8924610
          Length = 245

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 13/23 (56%), Positives = 14/23 (60%)

Query: 89  RDGDVVKGYYSLHQPDGSIRHVD 111
           RDG  V   YS   P GSIR+VD
Sbjct: 195 RDGSDVPAAYSTGCPAGSIRNVD 217


>05_03_0263 + 11234850-11235044,11235413-11237341
          Length = 707

 Score = 26.2 bits (55), Expect = 7.0
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 6/47 (12%)

Query: 74  VSDPHTGDHK---SQHESRDGDVVKGYYSLHQPDGSIRHVDYHGDKH 117
           +SD HT       S H+ R   +V  ++ LHQ DG   H++  GD++
Sbjct: 460 ISDLHTIHEDVVTSAHQKRAALIVLPFHKLHQMDG---HMESLGDEY 503


>08_02_1446 +
           27156449-27156790,27157961-27158042,27158698-27158792,
           27159421-27159492,27159572-27159651,27159728-27159827,
           27160064-27160141,27160408-27160455,27160570-27160638,
           27161035-27161175,27161262-27161516
          Length = 453

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 76  DPHTGDHKSQHESRDGDVVKGYYSLHQPD 104
           DP T DH   +E+ D   +   +  HQ D
Sbjct: 343 DPETTDHPQDYETEDASQISEAHLDHQAD 371


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.134    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,585,422
Number of Sequences: 37544
Number of extensions: 116900
Number of successful extensions: 195
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 188
Number of HSP's gapped (non-prelim): 9
length of query: 119
length of database: 14,793,348
effective HSP length: 73
effective length of query: 46
effective length of database: 12,052,636
effective search space: 554421256
effective search space used: 554421256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)