GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000253-TA|BGIBMGA000253-PA|IPR000618|Insect cuticle
protein
         (119 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.33 
SB_57086| Best HMM Match : PT (HMM E-Value=2.4)                        30   0.58 
SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)                   29   1.0  
SB_34999| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)                     27   4.1  
SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.2  
SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.5  
SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)                     26   9.5  

>SB_44749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2250

 Score = 30.7 bits (66), Expect = 0.33
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 80   GDHKSQHESRDGDVVKGY--YSLHQPDGSIRHVDYHGD 115
            GD   +H+  DGD V  +  Y+    D  +RH DY GD
Sbjct: 1874 GDSDVRHDDYDGDSVVRHDDYNDDNGDSDVRHDDYDGD 1911



 Score = 25.8 bits (54), Expect = 9.5
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 90   DGDVVKGYYSLHQPDGSIRHVDYHGD 115
            D DV    Y+    D  +RH DY GD
Sbjct: 1861 DSDVRHDEYNDEDGDSDVRHDDYDGD 1886


>SB_57086| Best HMM Match : PT (HMM E-Value=2.4)
          Length = 226

 Score = 29.9 bits (64), Expect = 0.58
 Identities = 16/72 (22%), Positives = 22/72 (30%)

Query: 16  TAQYGHDQSHGHAFSSQHISRHDGPAQXXXXXXXXXXXXXXXXXXXYYAHPKYEFEYKVS 75
           T QY H  +H +     H   H    Q                    Y H +Y  +Y   
Sbjct: 43  THQYPHQYTHQYTHQYTHQYTHQYTHQYTHQYTHPYTHPYTHQYTHQYTHHQYTHQYTHQ 102

Query: 76  DPHTGDHKSQHE 87
            PH   H+  H+
Sbjct: 103 YPHQYPHQYPHQ 114


>SB_36312| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 1283

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 67   KYEFEYKVSDPHT-GDHKSQHESRDGDVVKGYYSLHQPDGSIRHVDYHG-DKHS 118
            +Y  E      HT  DH+      +  V + Y + H P    R+ D HG  KHS
Sbjct: 965  RYRIERSHESVHTPNDHRRSSTRSEHSVQRRYSNEHSPSRKRRNSDNHGHKKHS 1018


>SB_34999| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 2/31 (6%)

Query: 80  GDHKSQHESRDG--DVVKGYYSLHQPDGSIR 108
           GDH+S HE + G  D+ +G ++  +P+  IR
Sbjct: 106 GDHQSHHEEKRGLQDLAQGLHACARPEKLIR 136


>SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)
          Length = 1481

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 79  TGDHKSQHESRDGDVVKGYYSLHQPDGSIRHVDYHGDK 116
           +  H S H+  D D + G+ +  Q +   R +DY G++
Sbjct: 123 SSSHMSAHKM-DDDYLSGFAADEQEESDARELDYEGER 159


>SB_25387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 533

 Score = 26.2 bits (55), Expect = 7.2
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 7/50 (14%)

Query: 64  AHPKYEFEYKVSDPHTGDHKSQHESRDGDVVKGYYSLHQPDGSIRHVDYH 113
           AHP     +K S+PHT  HK Q       V     SLH+PD   ++  YH
Sbjct: 290 AHPSQVPHHK-SEPHTSSHKPQLW-----VPPTQQSLHKPDNPHKN-PYH 332


>SB_38754| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 11/42 (26%), Positives = 19/42 (45%)

Query: 63  YAHPKYEFEYKVSDPHTGDHKSQHESRDGDVVKGYYSLHQPD 104
           Y+HP     Y+  +   GD  S+ E  + + ++     H PD
Sbjct: 74  YSHPINPMVYRGINKDAGDSDSEKEQEELNELENLLKKHDPD 115


>SB_54180| Best HMM Match : Mfp-3 (HMM E-Value=1.9)
          Length = 125

 Score = 25.8 bits (54), Expect = 9.5
 Identities = 10/22 (45%), Positives = 11/22 (50%)

Query: 96  GYYSLHQPDGSIRHVDYHGDKH 117
           GY+  H  D  I H DY G  H
Sbjct: 69  GYHGYHDHDVHIHHHDYGGHDH 90


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.134    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,084,775
Number of Sequences: 59808
Number of extensions: 135236
Number of successful extensions: 273
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 9
length of query: 119
length of database: 16,821,457
effective HSP length: 73
effective length of query: 46
effective length of database: 12,455,473
effective search space: 572951758
effective search space used: 572951758
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)