GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000253-TA|BGIBMGA000253-PA|IPR000618|Insect cuticle
protein
         (119 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    31   0.16 
U58750-14|AAB00655.4|  340|Caenorhabditis elegans Hypothetical p...    27   4.6  
Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical pr...    26   6.1  

>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 22/102 (21%), Positives = 32/102 (31%), Gaps = 2/102 (1%)

Query: 19  YGHDQSHGHAFSSQHISRHDGPAQXXXXXXXXXXXXXXXXXXXYYAH-PKYEFEYKVSDP 77
           +GH +SHGH   +     H G                      ++ H P +E      D 
Sbjct: 587 HGHHESHGHGHHAPAHHGHHGEHGVHHGHHGAGYGAHHGHHGAHHHHAPHHEHHEHHGDH 646

Query: 78  HTGDHKSQHESRDGDVVKGYYSLHQPDGSIRHVDYHGDKHSG 119
           H G H   H          ++  H   G+  H  +H   H G
Sbjct: 647 HHGSHGVHHGHHGTHHSLAHHGHHGGHGT-HHGAHHSPAHHG 687



 Score = 29.9 bits (64), Expect = 0.50
 Identities = 26/106 (24%), Positives = 36/106 (33%), Gaps = 10/106 (9%)

Query: 15  ATAQYGHDQSHGHAFSSQHISRHDGPAQXXXXXXXXXXXXXXXXXXXYYAHPKYEFEYKV 74
           A A +GH +SHGH   S     H G                        AH  +  E+  
Sbjct: 435 APAHHGHHESHGHGHHSPAHHGHHGEHHHAPAHHGHHGEHHHAP-----AHHGHHGEHGT 489

Query: 75  SDPHTGDHKS-QHESRDGD--VVKGYYSLHQPDGSIRHVDYHGDKH 117
              H G H S  H    G+      ++  H   G+  H  +HG+ H
Sbjct: 490 HHGHHGSHHSPAHHGHHGEHHHAPAHHGHHGEHGT--HHGHHGEHH 533


>U58750-14|AAB00655.4|  340|Caenorhabditis elegans Hypothetical
           protein F55G1.15 protein.
          Length = 340

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 12/29 (41%), Positives = 14/29 (48%), Gaps = 1/29 (3%)

Query: 9   LGVVAVATAQYGHDQSHGHAFSSQHISRH 37
           LG   + T   GH  SHGH  S+ H   H
Sbjct: 266 LGEPRITTGHGGHGHSHGHG-SADHEKHH 293


>Z99942-7|CAB17070.2|  462|Caenorhabditis elegans Hypothetical
           protein H13N06.5 protein.
          Length = 462

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/21 (42%), Positives = 10/21 (47%)

Query: 19  YGHDQSHGHAFSSQHISRHDG 39
           + HD  HGHA    H   H G
Sbjct: 80  HAHDHDHGHAHDHGHAHDHHG 100


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.317    0.134    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,381
Number of Sequences: 27539
Number of extensions: 91139
Number of successful extensions: 214
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 201
Number of HSP's gapped (non-prelim): 12
length of query: 119
length of database: 12,573,161
effective HSP length: 73
effective length of query: 46
effective length of database: 10,562,814
effective search space: 485889444
effective search space used: 485889444
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 54 (25.8 bits)