GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000253-TA|BGIBMGA000253-PA|IPR000618|Insect cuticle
protein
         (119 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   0.71 
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   3.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   3.8  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    20   8.8  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.4 bits (48), Expect = 0.71
 Identities = 10/34 (29%), Positives = 15/34 (44%)

Query: 62   YYAHPKYEFEYKVSDPHTGDHKSQHESRDGDVVK 95
            YY  P    EYKV + H    + + + +  D  K
Sbjct: 1068 YYGVPHSTLEYKVKERHLMRPRKRDQKQSDDKTK 1101


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 95  KGYYSLHQPDGSIRHVDYHGDK 116
           K Y  L QPD +IR     GDK
Sbjct: 759 KIYIILFQPDKNIRRKVTMGDK 780


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 21.0 bits (42), Expect = 3.8
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 95  KGYYSLHQPDGSIRHVDYHGDK 116
           K Y  L QPD +IR     GDK
Sbjct: 849 KIYIILFQPDKNIRRKVTMGDK 870


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 19.8 bits (39), Expect = 8.8
 Identities = 9/21 (42%), Positives = 9/21 (42%)

Query: 20  GHDQSHGHAFSSQHISRHDGP 40
           GH  SH HA    H S    P
Sbjct: 420 GHGHSHIHATPHHHHSHAATP 440


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.134    0.421 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,868
Number of Sequences: 429
Number of extensions: 1064
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 119
length of database: 140,377
effective HSP length: 51
effective length of query: 68
effective length of database: 118,498
effective search space:  8057864
effective search space used:  8057864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)
S2: 39 (19.8 bits)