Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000252-TA|BGIBMGA000252-PA|IPR000618|Insect cuticle
protein
         (228 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)                  30   1.8  
SB_5291| Best HMM Match : rve (HMM E-Value=2.3e-35)                    29   3.2  
SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)                   28   7.3  
SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.3  
SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)                    28   7.3  

>SB_59432| Best HMM Match : MORN (HMM E-Value=9.3e-26)
          Length = 1362

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 180  EYKIEDPHTGDLKSQHETRDGDVVKGYYSLHEADGSIRVVEYSADKHNG 228
            +Y   D +TG  +    TR G  V  Y ++  +  S+ + E+SAD+ NG
Sbjct: 1202 KYMHGDTYTGHWRDN--TRHGHGVMSYGAMSSSAASVYIGEWSADRKNG 1248


>SB_5291| Best HMM Match : rve (HMM E-Value=2.3e-35)
          Length = 426

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/51 (29%), Positives = 24/51 (47%)

Query: 10 QFNYGVTDGHTGDQKSQWEARDGDVVKGQYSLVEPDGTVRTVDYSADDHNG 60
          QFN  +      D+K Q   +DG ++ G   ++ P G V+ +    D H G
Sbjct: 6  QFNDRIEFKPYSDRKHQLSCQDGCLLWGSRVVIPPQGRVKLLQELHDGHPG 56


>SB_56656| Best HMM Match : VWA (HMM E-Value=3.8e-26)
          Length = 2157

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 17   DGHTGDQKSQWEARDGDVVKGQYSLVE 43
            D H G +K++W+  DGD   G    +E
Sbjct: 1566 DSHEGKEKNEWDNYDGDNDDGDSKTIE 1592


>SB_45722| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1080

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 163  GDQPHHEDYDAHPKYAFEYKIEDPHTGD 190
            GD    ++Y A+   A+ Y +EDP T D
Sbjct: 1049 GDHISDDEYRAYEDGAYTYPVEDPFTDD 1076


>SB_26477| Best HMM Match : GST_C (HMM E-Value=0.97)
          Length = 971

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 2/53 (3%)

Query: 163 GDQPHHEDYDAHPKYAFEYKIEDPHTGDLKSQHETRDGDVVKGYYSLHEADGS 215
           G +P+  D      + FE+K  +     L   H  R G+ ++ Y   H ADGS
Sbjct: 542 GVEPNDSDDGLFKLHNFEFKQSNECLAHLG--HSARSGNNIRVYLPSHSADGS 592


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.132    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,440,304
Number of Sequences: 59808
Number of extensions: 267956
Number of successful extensions: 435
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 430
Number of HSP's gapped (non-prelim): 6
length of query: 228
length of database: 16,821,457
effective HSP length: 80
effective length of query: 148
effective length of database: 12,036,817
effective search space: 1781448916
effective search space used: 1781448916
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)