Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000252-TA|BGIBMGA000252-PA|IPR000618|Insect cuticle
protein
         (228 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g14070.1 68417.m02172 AMP-binding protein, putative similar t...    29   2.6  
At1g33050.1 68414.m04069 expressed protein                             28   6.0  
At2g43910.1 68415.m05458 thiol methyltransferase, putative simil...    27   7.9  

>At4g14070.1 68417.m02172 AMP-binding protein, putative similar to
           AMP-binding protein [gi:1617272] from Brassica napus;
           contains Pfam AMP-binding enzyme domain PF00501;
           identical to cDNA acyl-CoA synthetase-like protein
           GI:20799730
          Length = 727

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 5/39 (12%)

Query: 174 HPKYAFEYKIEDPHTGDL-----KSQHETRDGDVVKGYY 207
           HP +  E+KI DP T ++     K   + R   V+KGYY
Sbjct: 520 HPMHGTEFKIVDPETNNVLPPGSKGIIKVRGPQVMKGYY 558


>At1g33050.1 68414.m04069 expressed protein
          Length = 693

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 2/40 (5%)

Query: 36  KGQYSLVEPDGTV--RTVDYSADDHNGFNAVVSRHGHASH 73
           K +YS+V  +     R+  Y A + NGF  VV  +G+  H
Sbjct: 616 KDKYSVVSRETVPGSRSYQYGATEDNGFGQVVPTNGYQQH 655


>At2g43910.1 68415.m05458 thiol methyltransferase, putative similar
           to thiol methyltransferase 1 GI:14583119 from [Brassica
           oleracea]
          Length = 227

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 36  KGQYSLVEPDGTVRTVDYSADDHNG 60
           K  Y L++PDG + T+ Y   DH G
Sbjct: 155 KSMYELLKPDGELITLMYPITDHVG 179


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.132    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,103,014
Number of Sequences: 28952
Number of extensions: 177397
Number of successful extensions: 241
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 240
Number of HSP's gapped (non-prelim): 3
length of query: 228
length of database: 12,070,560
effective HSP length: 79
effective length of query: 149
effective length of database: 9,783,352
effective search space: 1457719448
effective search space used: 1457719448
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)