GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000252-TA|BGIBMGA000252-PA|IPR000618|Insect cuticle
protein
         (228 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       30   0.013
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   3.4  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   4.5  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   4.5  
AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esteras...    21   6.0  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 30.3 bits (65), Expect = 0.013
 Identities = 15/44 (34%), Positives = 23/44 (52%)

Query: 181 YKIEDPHTGDLKSQHETRDGDVVKGYYSLHEADGSIRVVEYSAD 224
           Y +E  +    + +  T DG +V  Y  +   DGS+R V Y+AD
Sbjct: 195 YVVEGRNYRKYRVEERTSDGFIVGEYGVVSHDDGSLRGVRYTAD 238


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 37  GQYSLVEPDGTVRTVDYSADDHNGFNA 63
           G Y    P+G +   D S    NG++A
Sbjct: 142 GSYDPYSPNGKIGREDLSPSSLNGYSA 168


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 164 DQPHHEDYDAHPKYAFEYKIEDPHTGDLKSQHETRDGDVVKGYYSLH 210
           + P+ E+Y  H  Y   Y+ E P+       H + DG  V    + H
Sbjct: 364 NHPNSENYINHQNYVQGYQGEHPNYNHY-GYHYSGDGGEVAHLPNTH 409


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 13/47 (27%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 164 DQPHHEDYDAHPKYAFEYKIEDPHTGDLKSQHETRDGDVVKGYYSLH 210
           + P+ E+Y  H  Y   Y+ E P+       H + DG  V    + H
Sbjct: 312 NHPNSENYINHQNYVQGYQGEHPNYNHY-GYHYSGDGGEVAHLPNTH 357


>AJ845188-1|CAH60165.1|  517|Tribolium castaneum putative esterase
           protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 34  VVKGQYSLVEPDGTVRTVDYS 54
           VV G++   EP  T+++ DY+
Sbjct: 279 VVDGEFLTDEPIATIKSGDYN 299


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.132    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,030
Number of Sequences: 317
Number of extensions: 1725
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 228
length of database: 114,650
effective HSP length: 55
effective length of query: 173
effective length of database: 97,215
effective search space: 16818195
effective search space used: 16818195
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 42 (21.0 bits)