GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000252-TA|BGIBMGA000252-PA|IPR000618|Insect cuticle
protein
         (228 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb...    28   0.99 
SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    25   9.2  

>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1389

 Score = 28.3 bits (60), Expect = 0.99
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 23  QKSQWEARDGDVVKGQYSLVEPDGTVRTVDYSADDHN 59
           +KS W  R  D+++G  +L  P+    T+ +   DH+
Sbjct: 244 EKSHWRERIWDLIQGMVTLHIPEQAAWTIYFEWQDHS 280


>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 370

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 5  SHPRYQFNYGVTDGHTGDQKSQW-EARDGDVVKGQYS 40
          S+P   F +GV DGH GD+ +++      D++K Q S
Sbjct: 52 SNPPTSF-FGVFDGHGGDRVAKYCRQHLPDIIKSQPS 87


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.132    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 955,859
Number of Sequences: 5004
Number of extensions: 32275
Number of successful extensions: 47
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 46
Number of HSP's gapped (non-prelim): 2
length of query: 228
length of database: 2,362,478
effective HSP length: 70
effective length of query: 158
effective length of database: 2,012,198
effective search space: 317927284
effective search space used: 317927284
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 52 (25.0 bits)