GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000252-TA|BGIBMGA000252-PA|IPR000618|Insect cuticle
protein
         (228 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1093 + 23912303-23912467,23912671-23912801,23913079-239130...    29   2.4  
10_08_0649 + 19589807-19591024                                         28   7.2  
04_03_0285 + 13899127-13899984,13900003-13900474,13901149-13901285     28   7.2  

>07_03_1093 +
           23912303-23912467,23912671-23912801,23913079-23913087,
           23913146-23913228,23914494-23914596,23915988-23916066,
           23916174-23916274,23916371-23916479
          Length = 259

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 37  GQYSLVEPDGTVRTVDYSADDHNGFNAVVSRHG 69
           G Y LV  D  V  V+YS    +G+N VV+  G
Sbjct: 109 GNYFLVRHDAAVSCVEYSYSTVSGYNLVVATAG 141


>10_08_0649 + 19589807-19591024
          Length = 405

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/52 (26%), Positives = 27/52 (51%)

Query: 168 HEDYDAHPKYAFEYKIEDPHTGDLKSQHETRDGDVVKGYYSLHEADGSIRVV 219
           H++ + +P+    +  +D H G   S  ++ DG VV+       A G++R+V
Sbjct: 253 HDNLERNPEDTTIFGDDDDHDGSSSSSSDSGDGRVVEVLRVEWVAGGAVRLV 304


>04_03_0285 + 13899127-13899984,13900003-13900474,13901149-13901285
          Length = 488

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 109 AVSSQSIIRHDVTHGHGNEGQSYHVVPVAAHHG 141
           AV +  ++RH V H  G +G+  H   V  H G
Sbjct: 149 AVYNIGLLRHSVAHPGGGDGEHGHYYIVTLHPG 181


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.132    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,649,488
Number of Sequences: 37544
Number of extensions: 238309
Number of successful extensions: 332
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 328
Number of HSP's gapped (non-prelim): 4
length of query: 228
length of database: 14,793,348
effective HSP length: 80
effective length of query: 148
effective length of database: 11,789,828
effective search space: 1744894544
effective search space used: 1744894544
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 58 (27.5 bits)