GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000252-TA|BGIBMGA000252-PA|IPR000618|Insect cuticle
protein
         (228 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   0.44 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.3  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.5  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.5  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
          protein protein.
          Length = 138

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 9  YQFNYGVTDGHTGDQKSQWEARDGDVVKGQYSLVEPDGTVRTVDYSADDHNGF 61
          ++ + G++   +G  K Q +     V +G  S   PDG   ++ Y AD+ NGF
Sbjct: 46 FETSNGISHQESGQPK-QVDNETPVVSQGSDSYTAPDGQQVSITYVADE-NGF 96


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 36  KGQYSLVEPDGTVRTVDYSADDHNGFN 62
           KG+  + EP G+VR    S D+ NG +
Sbjct: 197 KGRLVITEPVGSVRPKFPSMDNINGLS 223


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 38  QYSLVEPDGTVRTVDYSADDHNGFNAVV 65
           QY + +P     TVDY  +    F+ +V
Sbjct: 163 QYDIGKPVVAEETVDYMLEKSGNFSRLV 190


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/20 (35%), Positives = 11/20 (55%)

Query: 170 DYDAHPKYAFEYKIEDPHTG 189
           DYD+ P+Y  + +    H G
Sbjct: 366 DYDSRPQYQIDKRSMGSHHG 385


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.132    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,627
Number of Sequences: 429
Number of extensions: 1920
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 228
length of database: 140,377
effective HSP length: 56
effective length of query: 172
effective length of database: 116,353
effective search space: 20012716
effective search space used: 20012716
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 42 (21.0 bits)