Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000251-TA|BGIBMGA000251-PA|IPR000618|Insect cuticle
protein
         (397 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    27   0.18 
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    25   0.95 
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       25   1.3  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    24   2.2  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   2.9  
AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    23   5.1  
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    23   5.1  
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    23   5.1  
AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax pr...    23   5.1  
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           23   5.1  
AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax pr...    23   5.1  
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    23   5.1  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   8.8  

>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 27.5 bits (58), Expect = 0.18
 Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 8/73 (10%)

Query: 149 PLDSHREHSKNKKPRYPFDLEPSEYTHSISIKHPRDEGSESEAHSHFGYSFDPNCKTKPK 208
           P  S + H  + + R P D   S Y  S++    +   SE + +S++  +  P+C     
Sbjct: 47  PYASSQHHHHHLQARPPQD---SPYDASVAAAC-KLYSSEGQQNSNYSSNSKPDCS---- 98

Query: 209 KGSHDTNSYSNVV 221
           KG+ D N Y++VV
Sbjct: 99  KGNADQNGYASVV 111


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 25.0 bits (52), Expect = 0.95
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 211 SHDTNSYSNVVDLETNPKYPLYSQDYFRDKHPDSSSN 247
           S ++   S V+   T+P  P+ S  +  ++  D++SN
Sbjct: 118 SFESGKPSGVISTNTSPPSPILSNRFGENEEADAASN 154


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 24.6 bits (51), Expect = 1.3
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 245 SSNYDFEKLRPFSSYRP---HKYEEITLKPPFSTRYTSPVIPDLAYSSEKMYP 294
           +S  DF    P S       H Y+    +P  +  Y++P++P  AY+   + P
Sbjct: 58  TSGSDFHSSSPSSDTSQDLQHSYQSPQTQP--ARFYSTPIVPHFAYNHNPLTP 108


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 154 REHSKNKKPRYPF 166
           R+H  N+KPR PF
Sbjct: 110 RKHKPNRKPRTPF 122


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 207  PKKGSHDTNSYSNVVDLET--NPKYPLYSQDYFRDKHPDSSSNY 248
            P+K + D  S  NVVD+ T   P     S       +P S++NY
Sbjct: 1323 PEKATCDGTSNVNVVDIVTTAKPAQSTTSVSTTTSWNPGSTTNY 1366


>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 164 YPFDLEPSEYTH 175
           Y FDL PS++ H
Sbjct: 298 YQFDLHPSQFAH 309


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 164 YPFDLEPSEYTH 175
           Y FDL PS++ H
Sbjct: 298 YQFDLHPSQFAH 309


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
           protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 164 YPFDLEPSEYTH 175
           Y FDL PS++ H
Sbjct: 298 YQFDLHPSQFAH 309


>AF416773-1|AAL09697.1|  268|Tribolium castaneum cephalothorax
           protein.
          Length = 268

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 164 YPFDLEPSEYTH 175
           Y FDL PS++ H
Sbjct: 254 YQFDLHPSQFAH 265


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 164 YPFDLEPSEYTH 175
           Y FDL PS++ H
Sbjct: 298 YQFDLHPSQFAH 309


>AF264695-1|AAG13009.1|  100|Tribolium castaneum cephalothorax
           protein.
          Length = 100

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 164 YPFDLEPSEYTH 175
           Y FDL PS++ H
Sbjct: 86  YQFDLHPSQFAH 97


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
           Scr protein.
          Length = 312

 Score = 22.6 bits (46), Expect = 5.1
 Identities = 7/12 (58%), Positives = 9/12 (75%)

Query: 164 YPFDLEPSEYTH 175
           Y FDL PS++ H
Sbjct: 298 YQFDLHPSQFAH 309


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 10/47 (21%), Positives = 20/47 (42%)

Query: 152 SHREHSKNKKPRYPFDLEPSEYTHSISIKHPRDEGSESEAHSHFGYS 198
           SH  +++N  P Y   ++P       +  H +   + +  +   GYS
Sbjct: 297 SHNYYAQNYAPTYYGQMQPDYLNSQTTQNHMQAMNNMAGTYQMTGYS 343


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.313    0.133    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,349
Number of Sequences: 317
Number of extensions: 4085
Number of successful extensions: 17
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 13
length of query: 397
length of database: 114,650
effective HSP length: 58
effective length of query: 339
effective length of database: 96,264
effective search space: 32633496
effective search space used: 32633496
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 44 (21.8 bits)