Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000251-TA|BGIBMGA000251-PA|IPR000618|Insect cuticle
protein
         (397 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)                    33   0.53 
SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)                   30   3.8  
SB_57911| Best HMM Match : Drf_FH1 (HMM E-Value=2.3)                   30   3.8  
SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   3.8  
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.0  
SB_58267| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.5)            29   6.6  
SB_2354| Best HMM Match : GRP (HMM E-Value=3.9)                        29   6.6  
SB_29494| Best HMM Match : Mpp10 (HMM E-Value=0.62)                    29   8.7  

>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2418

 Score = 32.7 bits (71), Expect = 0.53
 Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 9  ILFANLLTIFCQEETAQGSTEDQQKDDGKLSYSFSYGVADARTGDVKAVWEAKEGDTVKG 68
          +LF +LL  F Q   AQ +  +   D+G+ + S  Y + D+ +GDV ++++A     +  
Sbjct: 14 LLFLSLLKTF-QLAKAQDTLIEVNFDEGRPARSSVY-LFDSSSGDVFSLYQADPTVPLLF 71

Query: 69 QYSVLEADGSTRTVEYSAGPNSGFNAIV 96
          Q S +    ST+ +EY  G  + ++  V
Sbjct: 72 QISEVGHVTSTQEIEYEIGKTNKYDLTV 99


>SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)
          Length = 968

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 10/137 (7%)

Query: 171 SEYTHSISIKHPRDEGSESEAHSHFGYSFDPNCKTKPKKGSHDTNSYSNVVDLETNPKYP 230
           ++YT + +   P    +E   H++   +  P C   P+  +  T++Y+      T P +P
Sbjct: 646 AQYTLAYTPSTPTPTHAEY-THAYTPSTQTPTCPVHPRLHTEYTHAYTPSTPTPTRPVHP 704

Query: 231 L----YSQDYFRDKHPDSSSNYDF----EKLRPFSSYRPHKYEEIT-LKPPFSTRYTSPV 281
                Y   Y R  HP   + Y          P     PH + + T    P +   T PV
Sbjct: 705 RLHTEYIHAYTRRVHPRLHAQYTHAYTPSTHTPTRPVHPHLHAQYTHAYTPSTHTLTRPV 764

Query: 282 IPDLAYSSEKMYPDDIP 298
            P L       Y    P
Sbjct: 765 NPRLHTQYTHTYTPGTP 781


>SB_57911| Best HMM Match : Drf_FH1 (HMM E-Value=2.3)
          Length = 169

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 5/118 (4%)

Query: 175 HSISIKHPRDEGSESEAHSHFGYSFDPNCKTKPKKGSHDTNSYSNVVDLETNPKYPLYSQ 234
           HS ++K P D  S   + S     +D     +P   S     Y      E+ P+ P Y +
Sbjct: 16  HSRAVKRPGDGRSRPPSESRPRPPYDD----RPPSESRPRPPYDERPPSESRPRPP-YER 70

Query: 235 DYFRDKHPDSSSNYDFEKLRPFSSYRPHKYEEITLKPPFSTRYTSPVIPDLAYSSEKM 292
                +      +    + RP   Y   +  E   KPP+  R TS   P   Y    +
Sbjct: 71  PPSESRPRPPYDDRRTSETRPRPPYDERRVSENRPKPPYDDRRTSETRPRPPYDDRDL 128


>SB_56761| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 633

 Score = 29.9 bits (64), Expect = 3.8
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 201 PNCKTKPKKGSHDTNSYSNVVDLETNPKYPLYSQDYFRDKHPDSSSNYDFEKLRPFSSY 259
           P   +   KG ++T  Y+N  + E N +Y  Y+ DY  + + + ++ Y+ E    ++ Y
Sbjct: 234 PQMASTSSKGVYNTE-YNNEYNTEYNNEYNEYNNDYNTEYNNEYNTEYNTEYNTEYTEY 291


>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2014

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 11/26 (42%), Positives = 15/26 (57%)

Query: 67   KGQYSVLEADGSTRTVEYSAGPNSGF 92
            KG Y   + DG  RT+EY +G   G+
Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGY 1767


>SB_3142| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2209

 Score = 29.5 bits (63), Expect = 5.0
 Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 5/83 (6%)

Query: 34   DDGKLSYSFSYGVADARTGDVKAVWEAKEGDTVKGQYSVLEADGSTRTVEYSAGPNSGF- 92
            D G + + F      A    V+ V++ K+GD  +G  S LEA     T+ ++    S   
Sbjct: 1281 DHGSIVFQFETS-KKAPPKQVRTVFDYKKGD-FEGLRSALEAVDLANTIHHNDVNTSWQE 1338

Query: 93   --NAIVSNDNDFLPTNEIESKKT 113
              +  ++  ND++PT +I+ + T
Sbjct: 1339 WKDTFLAAVNDYIPTKKIKERNT 1361


>SB_58267| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.5)
          Length = 722

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 43  SYGVADARTGDVKAVWEAKEGDTVKGQYSVLEADGSTRTVEYSAGPNSGFNAIVSNDNDF 102
           S GV+    G+VKA    K+  TV+   +  EAD S+   E +A  +S   +   N N  
Sbjct: 180 SKGVSSLAGGEVKASPSTKQPTTVQANETCPEADVSSFETE-TADTSSSTTSRARNTN-- 236

Query: 103 LPTNEIESKKTGRSLIEDKTMRD 125
              N+ E K+   +    +T+RD
Sbjct: 237 -AQNQPERKREPWNFPPQETIRD 258


>SB_2354| Best HMM Match : GRP (HMM E-Value=3.9)
          Length = 216

 Score = 29.1 bits (62), Expect = 6.6
 Identities = 18/67 (26%), Positives = 30/67 (44%)

Query: 1   MARDMILLILFANLLTIFCQEETAQGSTEDQQKDDGKLSYSFSYGVADARTGDVKAVWEA 60
           +A  ++LL++F   L +FC  +  +G T  +   DG+  Y   Y       GD    +E 
Sbjct: 133 VATTVLLLVMFGLFLAVFCCCKKPKGYTGLEGYYDGEEGYDGEYNGEGGFEGDEAYGYEE 192

Query: 61  KEGDTVK 67
              D +K
Sbjct: 193 GYDDGLK 199


>SB_29494| Best HMM Match : Mpp10 (HMM E-Value=0.62)
          Length = 631

 Score = 28.7 bits (61), Expect = 8.7
 Identities = 21/100 (21%), Positives = 42/100 (42%), Gaps = 1/100 (1%)

Query: 10  LFANLLTIFCQEETAQGSTEDQQKDDGKLSYSFSYGVADARTGDVKAVWEAKEGDTVKGQ 69
           +  NL   F  + +  GS+E+ ++++G    +      + R  DV+ + +  E +  +G 
Sbjct: 128 IIENLTVTFANDNSKAGSSEE-EEEEGDGGVTERLSGLEQREDDVEVMDQDSEIEDQEGS 186

Query: 70  YSVLEADGSTRTVEYSAGPNSGFNAIVSNDNDFLPTNEIE 109
            S+ E  G    VE         +    +DND+     +E
Sbjct: 187 ESMDEDQGDEDEVEDEVPEEGDNDEDGDDDNDYDEDENLE 226


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.313    0.133    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,544,630
Number of Sequences: 59808
Number of extensions: 598559
Number of successful extensions: 895
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 893
Number of HSP's gapped (non-prelim): 10
length of query: 397
length of database: 16,821,457
effective HSP length: 84
effective length of query: 313
effective length of database: 11,797,585
effective search space: 3692644105
effective search space used: 3692644105
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)