Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000251-TA|BGIBMGA000251-PA|IPR000618|Insect cuticle
protein
         (397 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g29560.1 68418.m03629 Ca+2-binding EF hand family protein con...    33   0.44 
At1g05800.1 68414.m00606 lipase class 3 family protein similar t...    32   0.58 
At1g54840.2 68414.m06258 expressed protein                             32   0.77 
At1g54840.1 68414.m06257 expressed protein                             32   0.77 
At3g61200.1 68416.m06849 thioesterase family protein contains Pf...    31   1.8  
At5g23000.1 68418.m02688 myb family transcription factor (MYB37)...    29   5.4  
At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin fa...    29   5.4  
At2g04620.1 68415.m00470 cation efflux family protein potential ...    28   9.5  
At1g04590.2 68414.m00453 expressed protein isoform contains GG a...    28   9.5  
At1g04590.1 68414.m00452 expressed protein isoform contains GG a...    28   9.5  

>At5g29560.1 68418.m03629 Ca+2-binding EF hand family protein
           contains similarity to Ca+2-binding EF hand protein
           GI:2270994 from [Glycine max]
          Length = 220

 Score = 32.7 bits (71), Expect = 0.44
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 212 HDTNSYSNVVDLETNPKYPLYSQDYFRDKHPDSSSNYDFE 251
           H T SY+ +     +P +P+Y ++  R KH   +S YD E
Sbjct: 107 HLTMSYATLPTWMPSPTFPIYIKNIHRAKHGSDTSTYDTE 146


>At1g05800.1 68414.m00606 lipase class 3 family protein similar to
           DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
           GI:16215706; contains Pfam profile PF01764: Lipase
          Length = 471

 Score = 32.3 bits (70), Expect = 0.58
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 4/69 (5%)

Query: 230 PLYSQDYFRDKHPDSSSNYDFEKLRPFSSYRPHKYEEITLKPPFSTRYTSPVIPDLAYSS 289
           P+YSQ   RDK P    N D   +   +S R       T+ PP S   +SP+    + SS
Sbjct: 10  PIYSQSLVRDKTPQQKHNLDHFSISQHTSKR-LVVSSSTMSPPIS---SSPLSLPSSSSS 65

Query: 290 EKMYPDDIP 298
           + + P   P
Sbjct: 66  QAIPPSRAP 74


>At1g54840.2 68414.m06258 expressed protein
          Length = 268

 Score = 31.9 bits (69), Expect = 0.77
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 194 HFGYSFDPNCKTKPKKGSHDTNSYSNVVDLETNPKYPLYSQDYFRDKHPDSSSNYDFEKL 253
           H   + DP+   KPKK       Y N    ++N  YPL+   + R  HP++   + F+ +
Sbjct: 91  HIIRNVDPSLVMKPKK----LREYFNAKRNDSNRDYPLFVDLFPRKLHPETHVRHKFKFI 146

Query: 254 R 254
           R
Sbjct: 147 R 147


>At1g54840.1 68414.m06257 expressed protein
          Length = 349

 Score = 31.9 bits (69), Expect = 0.77
 Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 4/61 (6%)

Query: 194 HFGYSFDPNCKTKPKKGSHDTNSYSNVVDLETNPKYPLYSQDYFRDKHPDSSSNYDFEKL 253
           H   + DP+   KPKK       Y N    ++N  YPL+   + R  HP++   + F+ +
Sbjct: 91  HIIRNVDPSLVMKPKK----LREYFNAKRNDSNRDYPLFVDLFPRKLHPETHVRHKFKFI 146

Query: 254 R 254
           R
Sbjct: 147 R 147


>At3g61200.1 68416.m06849 thioesterase family protein contains Pfam
           profile PF03061: thioesterase family protein
          Length = 188

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%)

Query: 211 SHDTNSYSNVVDLETNPKYPLYSQDYFRDKHPDSSSNYDFEKLRPFS 257
           S DT + S V+D    P Y L   D+F+   PD S N DF     FS
Sbjct: 23  SSDTTAVSKVID----PNYVLMVADFFKAISPDESCN-DFTSFDSFS 64


>At5g23000.1 68418.m02688 myb family transcription factor (MYB37)
           contains PFAM profile: myb DNA binding domain PF00249;
          Length = 329

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 16/61 (26%), Positives = 27/61 (44%)

Query: 63  GDTVKGQYSVLEADGSTRTVEYSAGPNSGFNAIVSNDNDFLPTNEIESKKTGRSLIEDKT 122
           G+  +G Y+     G  + +    G NS  N   S  +    +N  E+K +G  L+E K 
Sbjct: 264 GEFTQGYYNYYNGHGDLKQMISGTGTNSNINMGGSGSSSSSISNLAENKSSGSLLLEYKC 323

Query: 123 M 123
           +
Sbjct: 324 L 324


>At5g15780.1 68418.m01845 pollen Ole e 1 allergen and extensin
           family protein contains Pfam profile PF01190: Pollen
           proteins Ole e I family
          Length = 401

 Score = 29.1 bits (62), Expect = 5.4
 Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 4/46 (8%)

Query: 246 SNYDFEKLRPFSS----YRPHKYEEITLKPPFSTRYTSPVIPDLAY 287
           SN+  E  R FS+    +RP    EI  + P + R + P++PD ++
Sbjct: 140 SNHHGENTRVFSAGFFTFRPENQPEICSQKPINLRGSKPLLPDPSF 185


>At2g04620.1 68415.m00470 cation efflux family protein potential
           member of the cation diffusion facilitator (CDF) family,
           or cation efflux (CE) family, see PMID:11500563
          Length = 798

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 10/95 (10%)

Query: 152 SHREHS-KNKKPRYPFDLEPSEYTHSISIKHPRDEGSESEAHSHFGYSFDPNCKTKPKKG 210
           SH+ HS KN++     D    E  H  S  H  +E  E + H H        C       
Sbjct: 559 SHQSHSHKNEEHHQHSDSHKHEEHHQHSDSHKHEEHHEHDHHHHSHSHKHEECN---HNH 615

Query: 211 SHDTNSYSNVVDLETNPKYPLYSQDYFRDKHPDSS 245
            H+  S+S+      N +   ++ D+  D  P+ S
Sbjct: 616 DHEHQSHSH------NHEECNHNHDHHSDHQPEKS 644


>At1g04590.2 68414.m00453 expressed protein isoform contains GG
           acceptor splice site at intron 7
          Length = 384

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 169 EPSEYTHSISIKHPRDEGSESEAHSHFGYSFDPNCKTKPKKGSHDTNSYSNVVDLETNPK 228
           EP  ++HS  I+     G+       F +    N   KP      + SY  V D  ++PK
Sbjct: 49  EPGVFSHSNGIRKYNTVGNAGALTGPFHHLLGVNQTNKPAFLRVQSMSYQFVADSHSSPK 108

Query: 229 YPLYSQDYFRDKHPDSSSNYDFEKLR 254
             + ++D   +   DSS   + E  R
Sbjct: 109 RIVKNED--EEDFSDSSKKGNAENPR 132


>At1g04590.1 68414.m00452 expressed protein isoform contains GG
           acceptor splice site at intron 7
          Length = 381

 Score = 28.3 bits (60), Expect = 9.5
 Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 169 EPSEYTHSISIKHPRDEGSESEAHSHFGYSFDPNCKTKPKKGSHDTNSYSNVVDLETNPK 228
           EP  ++HS  I+     G+       F +    N   KP      + SY  V D  ++PK
Sbjct: 49  EPGVFSHSNGIRKYNTVGNAGALTGPFHHLLGVNQTNKPAFLRVQSMSYQFVADSHSSPK 108

Query: 229 YPLYSQDYFRDKHPDSSSNYDFEKLR 254
             + ++D   +   DSS   + E  R
Sbjct: 109 RIVKNED--EEDFSDSSKKGNAENPR 132


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.133    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,546,041
Number of Sequences: 28952
Number of extensions: 418915
Number of successful extensions: 729
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 727
Number of HSP's gapped (non-prelim): 10
length of query: 397
length of database: 12,070,560
effective HSP length: 83
effective length of query: 314
effective length of database: 9,667,544
effective search space: 3035608816
effective search space used: 3035608816
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 60 (28.3 bits)