GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000251-TA|BGIBMGA000251-PA|IPR000618|Insect cuticle
protein
         (397 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0139 - 11139004-11139031,11139300-11141017,11141408-111414...    36   0.057
03_05_0248 + 22348504-22348568,22349064-22349371,22349476-223500...    32   0.92 
04_04_1106 - 30948626-30948724,30948841-30949176,30949231-309493...    29   4.9  
11_01_0192 - 1523572-1526097                                           29   6.5  
06_03_1130 - 27826384-27827039,27827800-27828031,27828120-278284...    29   8.6  

>10_06_0139 -
           11139004-11139031,11139300-11141017,11141408-11141477,
           11142520-11143361
          Length = 885

 Score = 35.9 bits (79), Expect = 0.057
 Identities = 17/71 (23%), Positives = 31/71 (43%)

Query: 183 RDEGSESEAHSHFGYSFDPNCKTKPKKGSHDTNSYSNVVDLETNPKYPLYSQDYFRDKHP 242
           +D GSE E ++    +FD   +T+ K+ S       ++V L    ++ +   D +  K P
Sbjct: 809 KDHGSEEEQNAIMSANFDEYHQTQDKESSDANKQVGSIVPLPREQEHGILEHDEYAPKDP 868

Query: 243 DSSSNYDFEKL 253
           D     D   +
Sbjct: 869 DKYKQSDIRNI 879


>03_05_0248 +
           22348504-22348568,22349064-22349371,22349476-22350039,
           22350082-22350128,22351244-22351715,22352349-22352611
          Length = 572

 Score = 31.9 bits (69), Expect = 0.92
 Identities = 28/101 (27%), Positives = 47/101 (46%), Gaps = 11/101 (10%)

Query: 21  EETAQGSTEDQQKDDGKLSYSFSYGVADARTGDVKAVWEAKEGDTVKGQYSVLEADG--S 78
           ++ A+GS++D+   DG+ S +        R G  KA  +A EG+T +GQ S  E +    
Sbjct: 59  QDVAEGSSDDES--DGETSKTKKRA---PRRGRKKATIQASEGETQEGQVSTEEDESPEG 113

Query: 79  TRTVEYSAGPNSGFNAIVSNDNDFLPTNEIESKKTGRSLIE 119
           T+ ++      +   A  S + D       E KK GR  ++
Sbjct: 114 TKKIKRRGRKKAATTASSSEEKD----KAKEPKKRGRRKVK 150


>04_04_1106 -
           30948626-30948724,30948841-30949176,30949231-30949353,
           30949425-30949517,30949603-30949806,30949884-30950134,
           30951011-30952391,30952737-30953174
          Length = 974

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 26/118 (22%), Positives = 46/118 (38%), Gaps = 2/118 (1%)

Query: 148 RPLDSHREHSKNKKPRYPFDLEPSEYTHSISIKHPRDEGSESEAHSHFGYSFDPNCKTKP 207
           R   +H +H           ++P+ ++ S  I    DE + +  +    +S  P      
Sbjct: 252 RMKQTHLDHRDRVNEVQADSIDPTVFSESRCIALI-DETTATRINCTTVHSVGPKPINVD 310

Query: 208 KKGSHDTNSYSNVVDLETNPKYPLYSQDYFRDKHPDSSSNYDFEKLRPFSSYRPHKYE 265
           K  +   NS   +   +  P Y   SQ+  +DKH D   +   ++LR  S    H+ E
Sbjct: 311 KNQAQAPNSKRIIQQAQKQPSYIAISQENAQDKHADGVVHVQEKQLRTASQVN-HRQE 367


>11_01_0192 - 1523572-1526097
          Length = 841

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 15/36 (41%), Positives = 17/36 (47%)

Query: 42  FSYGVADARTGDVKAVWEAKEGDTVKGQYSVLEADG 77
           F++ V  AR  D   VW A  G  V G  S L  DG
Sbjct: 72  FTFSVWFARAADRAVVWSANRGRPVHGARSRLALDG 107


>06_03_1130 - 27826384-27827039,27827800-27828031,27828120-27828491,
            27829243-27829449,27829611-27829704,27829806-27829870,
            27829946-27830398,27830467-27830760,27830837-27831295,
            27831367-27831588,27831755-27831968,27832039-27832494,
            27833280-27833389,27833468-27833644,27833758-27833979,
            27834048-27834167,27834274-27834383,27834552-27834607,
            27835252-27835440,27835602-27835775,27836066-27836281,
            27837066-27837106,27837971-27837986,27838330-27838415,
            27838737-27838910,27839093-27839149,27839720-27840064,
            27840175-27840216,27840377-27840496,27840575-27840724,
            27840830-27841534,27841609-27841954,27842978-27843080,
            27844817-27844860,27845905-27846101,27846322-27846344,
            27846802-27847122,27847406-27847579,27847843-27848047,
            27848817-27848880,27850097-27850278,27850291-27850350,
            27850688-27850748,27851249-27851313,27851491-27851569,
            27851656-27852021,27852442-27852790,27852887-27852989,
            27853103-27853373,27854296-27854405,27854515-27854652
          Length = 3364

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 222  DLETNPKYPLYSQDYFRDKHPDSSSNYDFEKLRPFSSYRPHKYEEITLKPPFSTRYTS-- 279
            DL   P +P    DY  +K   + S+   +  +P  +    ++E+  +   F  RY +  
Sbjct: 2780 DLTQYPVFPWVLTDYTSEKLDFNKSSTFRDLSKPIGALDEKRFEQYVIGQVFEDRYVNFD 2839

Query: 280  -PVIPDLAYSS 289
             P IP   Y S
Sbjct: 2840 DPDIPSFYYGS 2850


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.133    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,303,526
Number of Sequences: 37544
Number of extensions: 477045
Number of successful extensions: 616
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 614
Number of HSP's gapped (non-prelim): 5
length of query: 397
length of database: 14,793,348
effective HSP length: 84
effective length of query: 313
effective length of database: 11,639,652
effective search space: 3643211076
effective search space used: 3643211076
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)