GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000251-TA|BGIBMGA000251-PA|IPR000618|Insect cuticle
protein
         (397 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82096-4|CAD45613.1|  548|Caenorhabditis elegans Hypothetical pr...    30   3.3  
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    30   3.3  

>Z82096-4|CAD45613.1|  548|Caenorhabditis elegans Hypothetical
           protein ZK909.2c protein.
          Length = 548

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 168 LEPSEYTHSISIKHPR-DEGSESEAHSHFGYSFDPNCKTKP----KKGSHDTNSYSNVVD 222
           +E  E+   +S    R DEGS  E     G+   P C+T P     K S+ T + +    
Sbjct: 1   MEEEEWRRRLSAAIRREDEGSLEEDEEDEGFILHPLCRTGPLQMTVKASNSTTTLTPSST 60

Query: 223 LETNPKYPLYSQDYFRDKHPDSSS 246
             T+P  P    D   D   D ++
Sbjct: 61  TTTSPSMPSSPSDSPSDDFSDDTN 84


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.9 bits (64), Expect = 3.3
 Identities = 33/199 (16%), Positives = 66/199 (33%), Gaps = 3/199 (1%)

Query: 21  EETAQGSTEDQQKDDGKLSYSFSYGVADARTGDVKAVWEAKEGDTVKGQYSVLEADGSTR 80
           ++++  S+          S S S   + + + D K   +      +K  +   E+  S+ 
Sbjct: 105 QDSSSSSSSSSSSSSSSSSSSSSSSSSSSESEDEKHHHKKHAKKHLKKHHKKAESSSSSS 164

Query: 81  TVEYSAGPNSGFNAIVSNDNDFLPTNEIESKKTGRSLIEDKTMRDYGNXXXXXXXXXXXX 140
           +   S+  +S  ++  S   D    ++  +KK  +     K      +            
Sbjct: 165 SSSSSSSSSSSSSSS-SESEDEKHHHKKHAKKHLKK--HHKKAESSSSSSSSSSSSSSSS 221

Query: 141 XXXXXXXRPLDSHREHSKNKKPRYPFDLEPSEYTHSISIKHPRDEGSESEAHSHFGYSFD 200
                     D    H K+   ++    E S  + S S        SE E H H  ++  
Sbjct: 222 SSSSSSSESEDEKHHHKKHAVKKHHKKAESSSSSSSSSSSSSSSSSSEDEKHHHKKHAAK 281

Query: 201 PNCKTKPKKGSHDTNSYSN 219
            + K   K  S  ++S S+
Sbjct: 282 KHVKHHKKAASSSSSSSSS 300


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.313    0.133    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,962,445
Number of Sequences: 27539
Number of extensions: 436145
Number of successful extensions: 774
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 774
Number of HSP's gapped (non-prelim): 2
length of query: 397
length of database: 12,573,161
effective HSP length: 83
effective length of query: 314
effective length of database: 10,287,424
effective search space: 3230251136
effective search space used: 3230251136
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)