GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000251-TA|BGIBMGA000251-PA|IPR000618|Insect cuticle
protein
         (397 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    32   0.010
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    24   2.6  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 31.9 bits (69), Expect = 0.010
 Identities = 31/111 (27%), Positives = 47/111 (42%), Gaps = 15/111 (13%)

Query: 174 THSIS--IKHPRDEGSESEAHSHFGYSFDPNCKTKPKKGSHDTNSYSN-VVDLETNPK-- 228
           THS S  +  PRD   E E           +  T   K +H T   ++ V   +  P+  
Sbjct: 281 THSDSSVVGSPRDSPIEPEIEIS-----QNSVSTGSDKENHKTEEPNDEVATYDNTPRDF 335

Query: 229 -YPLYSQDYFRDKHPDSSSNYDFEKLRPFSSYRPHKYEEITLKPPFSTRYT 278
            Y +YS++ +   H  S+ N DF+     S  +PH +    L P  S+ YT
Sbjct: 336 PYYMYSREQYSQSHLISNENRDFQTTPTVSVEQPHLF----LYPEVSSTYT 382


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)

Query: 154 REHSKNKKPRYPF 166
           R+H  N+KPR PF
Sbjct: 4   RKHKPNRKPRTPF 16


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.133    0.391 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,068
Number of Sequences: 429
Number of extensions: 5178
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2
Number of HSP's gapped (non-prelim): 2
length of query: 397
length of database: 140,377
effective HSP length: 59
effective length of query: 338
effective length of database: 115,066
effective search space: 38892308
effective search space used: 38892308
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)