Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000250-TA|BGIBMGA000250-PA|IPR000618|Insect cuticle
protein
         (144 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       25   0.35 
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    22   1.9  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    22   1.9  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    22   1.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    20   10.0 

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 24.6 bits (51), Expect = 0.35
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 67  YSVNDPHTGDHKTQWESRDGDVVKGAYSL-AEPDGTTRIVEYTAD 110
           Y V   +   ++ +  + DG +V G Y + +  DG+ R V YTAD
Sbjct: 195 YVVEGRNYRKYRVEERTSDGFIV-GEYGVVSHDDGSLRGVRYTAD 238


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 92  AYSLAEPDGTTRIVEYTADKHN 113
           A+ LA P GTTR++   A  +N
Sbjct: 328 AFMLAHPYGTTRLMSSFAFDNN 349


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 92  AYSLAEPDGTTRIVEYTADKHN 113
           A+ LA P GTTR++   A  +N
Sbjct: 329 AFMLAHPYGTTRLMSSFAFDNN 350


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 22.2 bits (45), Expect = 1.9
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 92  AYSLAEPDGTTRIVEYTADKHN 113
           A+ LA P GTTR++   A  +N
Sbjct: 329 AFMLAHPYGTTRLMSSFAFDNN 350


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 19.8 bits (39), Expect = 10.0
 Identities = 9/24 (37%), Positives = 10/24 (41%)

Query: 64  AFDYSVNDPHTGDHKTQWESRDGD 87
           AFD+        DH     SR GD
Sbjct: 364 AFDFHREREPVADHHANLYSRPGD 387


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,603
Number of Sequences: 317
Number of extensions: 664
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 144
length of database: 114,650
effective HSP length: 51
effective length of query: 93
effective length of database: 98,483
effective search space:  9158919
effective search space used:  9158919
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.9 bits)
S2: 39 (19.8 bits)