Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000250-TA|BGIBMGA000250-PA|IPR000618|Insect cuticle
protein
         (144 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18B5.11c |cds1||replication checkpoint kinase Cds1|Schizosac...    26   2.0  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   3.4  
SPBC337.10c |||anamorsin family protein|Schizosaccharomyces pomb...    25   6.0  

>SPCC18B5.11c |cds1||replication checkpoint kinase
           Cds1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 99  DGTTRIVEYTADKHNGF 115
           DG T ++  T D HNGF
Sbjct: 43  DGKTEVIPLTTDVHNGF 59


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 97  EPDGTTRIVEYTADKHNGFNAVVKRIGQAHHPQV 130
           + D    +  +  +KH  FN  VK++G  H P +
Sbjct: 305 DEDDELLLHRHITNKHKDFNLHVKQLGLLHKPSL 338


>SPBC337.10c |||anamorsin family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 288

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 81  WESRDGDVVKGAYSLAEPDGTTRIVEYTADK 111
           W S  G ++  A++   P GT R+   TAD+
Sbjct: 65  WSSTLGPILSQAFASVHPGGTLRVYS-TADE 94


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 409,290
Number of Sequences: 5004
Number of extensions: 12847
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 19
Number of HSP's gapped (non-prelim): 3
length of query: 144
length of database: 2,362,478
effective HSP length: 67
effective length of query: 77
effective length of database: 2,027,210
effective search space: 156095170
effective search space used: 156095170
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)