GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000250-TA|BGIBMGA000250-PA|IPR000618|Insect cuticle
protein
         (144 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0971 - 23151055-23151930,23152024-23152290                       31   0.28 
03_02_0213 + 6480521-6480644,6482347-6482499,6482582-6482980,648...    28   3.4  
03_02_0499 - 8908323-8908423,8908822-8908972,8909761-8909867,890...    27   4.5  
07_01_1121 - 10344330-10344725                                         27   5.9  
12_01_1117 - 11922304-11922423,11922673-11922801,11923070-119231...    27   7.9  
03_06_0304 - 33001393-33001527,33001627-33001764,33001861-330019...    27   7.9  

>08_02_0971 - 23151055-23151930,23152024-23152290
          Length = 380

 Score = 31.5 bits (68), Expect = 0.28
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 69  VNDPHTGDHKTQWESRDGDVVKGAYSLAEPDGTTRIVEYTADKHNGFNAVVKRI 122
           V+DP T DH   WE  DG     ++ +  P    R +     KH+ F++ V+++
Sbjct: 34  VDDPAT-DHVVSWEDDDGGESASSFVVWRPPEFARDILPNYFKHSNFSSFVRQL 86


>03_02_0213 +
           6480521-6480644,6482347-6482499,6482582-6482980,
           6483158-6483234,6483990-6485312
          Length = 691

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)

Query: 68  SVNDPHTGDHKTQWESRDGDVVKGAYSLAEPDGTTR--IVEYTADKHNGFNAVVKRIG 123
           S ND   G  K+Q + RD D   G     +P  T++   V ++ + H  F   V  +G
Sbjct: 166 SANDGAEGSWKSQKKKRDKDDDDGELESGDPSSTSKKPRVVWSVELHQQFVNAVNHLG 223


>03_02_0499 -
           8908323-8908423,8908822-8908972,8909761-8909867,
           8909954-8910170,8910941-8911148,8911261-8911358
          Length = 293

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)

Query: 68  SVNDPHTGDHKTQWESRDGDVVKGAYSLAEPDGTTRIVEYTADKHNG-FNAVVKRIG 123
           S N+   G+   +WE+R   V      L+  D   R++   AD+  G  + +V  +G
Sbjct: 51  SRNEAELGERLKEWEARGFRVTISVCDLSARDQRERLIGDVADRFGGKLDILVNNVG 107


>07_01_1121 - 10344330-10344725
          Length = 131

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 78  KTQWESRDGDVVKGAYSLAEPDGTTRIVEYTADKHNGFNA 117
           KT+W   DGD++  A +    D T  +   TA +  G +A
Sbjct: 15  KTEWRRIDGDLIVKAAARRRADATVVLAPTTAVRGEGDSA 54


>12_01_1117 -
           11922304-11922423,11922673-11922801,11923070-11923155,
           11923724-11923863,11923888-11924119,11924297-11924733,
           11925240-11925559
          Length = 487

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 77  HKTQWESRDGDVVKGAYSLAEPDGTTRIVEYTA 109
           H   WE +D +V+KGA + A  +     V+Y A
Sbjct: 58  HHVPWEYKDNEVIKGA-TYAHKEDMKEAVKYWA 89


>03_06_0304 -
           33001393-33001527,33001627-33001764,33001861-33001938,
           33002048-33002124,33003370-33003871
          Length = 309

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/37 (32%), Positives = 23/37 (62%)

Query: 93  YSLAEPDGTTRIVEYTADKHNGFNAVVKRIGQAHHPQ 129
           Y ++ PD   +I E+ AD     +A+V+++G+A  P+
Sbjct: 255 YGISTPDHVRQIAEWGADGVIIGSAMVRQLGEAASPK 291


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.135    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,671,784
Number of Sequences: 37544
Number of extensions: 87798
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 6
length of query: 144
length of database: 14,793,348
effective HSP length: 75
effective length of query: 69
effective length of database: 11,977,548
effective search space: 826450812
effective search space used: 826450812
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)