GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000250-TA|BGIBMGA000250-PA|IPR000618|Insect cuticle
protein
         (144 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   0.55 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    24   0.73 
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    23   0.96 
AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced prot...    21   5.1  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 0.55
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 95  LAEPDGTTRIVEYTADKHNGFN 116
           LAE DGTT +     DK +GF+
Sbjct: 57  LAEFDGTTVLCRVCGDKASGFH 78


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 23.8 bits (49), Expect = 0.73
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)

Query: 85  DGDVVKGAYSLAEPDGTTRIVEYTAD---KHNGFNAVV 119
           D + V G Y LAEPD    I   T D   +H G  +++
Sbjct: 87  DNEEVCGIYFLAEPDQKIEINFITFDIPCEHRGLVSII 124


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 23.4 bits (48), Expect = 0.96
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)

Query: 88  VVKGAYSLAEPDGTTRIVEYTADKHNGF 115
           V +G+ S   PDG    + Y AD+ NGF
Sbjct: 70  VSQGSDSYTAPDGQQVSITYVADE-NGF 96


>AB264334-1|BAF44089.1|   30|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 30

 Score = 21.0 bits (42), Expect = 5.1
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 97  EPDGTTRIVEYTADKHNGFN 116
           E DGTT +     DK +GF+
Sbjct: 1   EFDGTTVLCRVCGDKASGFH 20


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.135    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,171
Number of Sequences: 429
Number of extensions: 646
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of query: 144
length of database: 140,377
effective HSP length: 52
effective length of query: 92
effective length of database: 118,069
effective search space: 10862348
effective search space used: 10862348
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)