GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000250-TA|BGIBMGA000250-PA|IPR000618|Insect cuticle
protein
         (144 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g04380.2 68416.m00464 SET domain-containing protein (SUVR4) n...    27   4.9  
At3g04380.1 68416.m00463 SET domain-containing protein (SUVR4) n...    27   4.9  
At2g44470.1 68415.m05529 glycosyl hydrolase family 1 protein con...    27   6.5  

>At3g04380.2 68416.m00464 SET domain-containing protein (SUVR4)
           nearly identical to Su(VAR)3-9-related protein 4
           [Arabidopsis thaliana] GI:17066863; contains Pfam
           profiles PF00856: SET domain, PF05033: Pre-SET motif;
           identical to cDNA Su(VAR)3-9-related protein 4 (SUVR4)
           GI:17066862, which is an SET domain protein similar to
           Drosophila SU(VAR)3-9
          Length = 465

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 75  GDHKTQWESRDGDVVKGAYS----LAEPDGTTRIVEYTADKHN 113
           GD K +++SR  D+ KG+ S    L +  G+  + ++T   HN
Sbjct: 107 GDRKRKYKSRIADITKGSESVKIPLVDDVGSEAVPKFTYIPHN 149


>At3g04380.1 68416.m00463 SET domain-containing protein (SUVR4)
           nearly identical to Su(VAR)3-9-related protein 4
           [Arabidopsis thaliana] GI:17066863; contains Pfam
           profiles PF00856: SET domain, PF05033: Pre-SET motif;
           identical to cDNA Su(VAR)3-9-related protein 4 (SUVR4)
           GI:17066862, which is an SET domain protein similar to
           Drosophila SU(VAR)3-9
          Length = 492

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 4/43 (9%)

Query: 75  GDHKTQWESRDGDVVKGAYS----LAEPDGTTRIVEYTADKHN 113
           GD K +++SR  D+ KG+ S    L +  G+  + ++T   HN
Sbjct: 134 GDRKRKYKSRIADITKGSESVKIPLVDDVGSEAVPKFTYIPHN 176


>At2g44470.1 68415.m05529 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           similar to anther-specific protein ATA27 (GI:2746341)
           [Arabidopsis thaliana]
          Length = 451

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 96  AEPDGTTRIVEYTADKHNGFNAVVKRIGQAHH 127
           + P+G  R++ Y  DK+N     VK  G  H+
Sbjct: 388 SHPEGLRRVLNYIKDKYNNPIVYVKENGIDHY 419


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.135    0.423 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,153,630
Number of Sequences: 28952
Number of extensions: 69541
Number of successful extensions: 130
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 129
Number of HSP's gapped (non-prelim): 3
length of query: 144
length of database: 12,070,560
effective HSP length: 75
effective length of query: 69
effective length of database: 9,899,160
effective search space: 683042040
effective search space used: 683042040
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)