Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000249-TA|BGIBMGA000249-PA|IPR000618|Insect cuticle
protein
         (178 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|...    26   2.8  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   8.5  

>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/30 (36%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 149 TYPK-FGPTPFPEYENFDFDGQIFPQYNQF 177
           T+ K F  +  P+ EN  FDG+ FP + ++
Sbjct: 195 TFTKHFTKSNAPDVENMSFDGKDFPVFKEY 224


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)

Query: 149 TYPKFGPTPFPEYENFDFDGQIFPQY 174
           ++    P   P YE+FDF G I  ++
Sbjct: 59  SFENSNPQDGPNYEDFDFMGSIHKEF 84


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.139    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 530,222
Number of Sequences: 5004
Number of extensions: 14896
Number of successful extensions: 29
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27
Number of HSP's gapped (non-prelim): 2
length of query: 178
length of database: 2,362,478
effective HSP length: 68
effective length of query: 110
effective length of database: 2,022,206
effective search space: 222442660
effective search space used: 222442660
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 51 (24.6 bits)