GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000249-TA|BGIBMGA000249-PA|IPR000618|Insect cuticle
protein
         (178 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       26   0.15 
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    24   0.62 
AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochr...    23   1.4  
U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.    21   4.4  
AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain tran...    21   4.4  
AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.           21   4.4  

>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 26.2 bits (55), Expect = 0.15
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)

Query: 2   LLGQYSLVE-PDGSVRTVDYTAD 23
           ++G+Y +V   DGS+R V YTAD
Sbjct: 216 IVGEYGVVSHDDGSLRGVRYTAD 238


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 24.2 bits (50), Expect = 0.62
 Identities = 10/30 (33%), Positives = 16/30 (53%)

Query: 1   MLLGQYSLVEPDGSVRTVDYTADSLHGFNA 30
           M  G Y    P+G +   D +  SL+G++A
Sbjct: 139 MSSGSYDPYSPNGKIGREDLSPSSLNGYSA 168


>AF265297-1|AAG17640.1|  125|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 125

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 11/28 (39%), Positives = 13/28 (46%)

Query: 139 PQVYPSPGPLTYPKFGPTPFPEYENFDF 166
           PQVYP P      +F P    +  NF F
Sbjct: 97  PQVYPDPEKFDPDRFLPENCLKRHNFAF 124


>U14732-1|AAC46491.1|  322|Tribolium castaneum fushi-tarazu protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 148 LTYPKFGPTPFPEYENF-DFDGQIF 171
           LT P+   TP  +YENF  +D   F
Sbjct: 130 LTRPQAKKTPPNQYENFQQYDNNNF 154


>AY043292-2|AAK96032.1|  290|Tribolium castaneum homeodomain
           transcription factor Fushitarazu protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 148 LTYPKFGPTPFPEYENF-DFDGQIF 171
           LT P+   TP  +YENF  +D   F
Sbjct: 130 LTRPQAKKTPPNQYENFQQYDNNNF 154


>AF321227-1|AAK16421.1|  290|Tribolium castaneum Ftz protein.
          Length = 290

 Score = 21.4 bits (43), Expect = 4.4
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 148 LTYPKFGPTPFPEYENF-DFDGQIF 171
           LT P+   TP  +YENF  +D   F
Sbjct: 130 LTRPQAKKTPPNQYENFQQYDNNNF 154


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.139    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,774
Number of Sequences: 317
Number of extensions: 829
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 178
length of database: 114,650
effective HSP length: 53
effective length of query: 125
effective length of database: 97,849
effective search space: 12231125
effective search space used: 12231125
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 41 (20.6 bits)