GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000249-TA|BGIBMGA000249-PA|IPR000618|Insect cuticle
protein
         (178 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1093 + 23912303-23912467,23912671-23912801,23913079-239130...    33   0.13 
04_04_0239 - 23843235-23843243,23843334-23844047,23844138-238442...    27   6.5  
01_02_0007 + 10132380-10133201                                         27   6.5  
05_03_0039 - 7621613-7622695                                           27   8.5  

>07_03_1093 +
           23912303-23912467,23912671-23912801,23913079-23913087,
           23913146-23913228,23914494-23914596,23915988-23916066,
           23916174-23916274,23916371-23916479
          Length = 259

 Score = 33.1 bits (72), Expect = 0.13
 Identities = 14/37 (37%), Positives = 24/37 (64%)

Query: 4   GQYSLVEPDGSVRTVDYTADSLHGFNAVVSKSGPNVH 40
           G Y LV  D +V  V+Y+  ++ G+N VV+ +G +V+
Sbjct: 109 GNYFLVRHDAAVSCVEYSYSTVSGYNLVVATAGRHVN 145


>04_04_0239 -
           23843235-23843243,23843334-23844047,23844138-23844287,
           23844389-23844601,23844697-23844811,23844919-23846300,
           23847217-23847279
          Length = 881

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)

Query: 139 PQVYPSPGPLTYPKFGPTPFP 159
           PQ  P P P++ P  GP P P
Sbjct: 755 PQAVPLPKPVSIPASGPAPAP 775


>01_02_0007 + 10132380-10133201
          Length = 273

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 12/24 (50%), Positives = 13/24 (54%)

Query: 136 QAFPQVYPSPGPLTYPKFGPTPFP 159
           Q  PQ  P PGP   P+ GP P P
Sbjct: 91  QPQPQPLPLPGPQPLPQPGPQPNP 114


>05_03_0039 - 7621613-7622695
          Length = 360

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 139 PQVYPSPGPLTYPKFGPTPFPEYE 162
           P+ YP P P T P+  P P P  E
Sbjct: 84  PKPYPEPKPETKPELKPEPKPNPE 107


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.139    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,292,112
Number of Sequences: 37544
Number of extensions: 92783
Number of successful extensions: 539
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 451
Number of HSP's gapped (non-prelim): 88
length of query: 178
length of database: 14,793,348
effective HSP length: 78
effective length of query: 100
effective length of database: 11,864,916
effective search space: 1186491600
effective search space used: 1186491600
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)