GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000249-TA|BGIBMGA000249-PA|IPR000618|Insect cuticle
protein
         (178 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             30   1.2  
SB_24760| Best HMM Match : PT (HMM E-Value=0.17)                       28   5.0  
SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06)                   27   6.6  

>SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 789

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 137 AFPQVYPSPGPLTYPKFGPTPFPEY 161
           A+P  YP+  P++YP   P  +P +
Sbjct: 449 AYPAYYPASSPVSYPASSPASYPAF 473



 Score = 27.9 bits (59), Expect = 5.0
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 139 PQVYPSPGPLTYPKFGPTPFP 159
           P  YP+  P +YP F P  +P
Sbjct: 459 PVSYPASSPASYPAFSPASYP 479


>SB_24760| Best HMM Match : PT (HMM E-Value=0.17)
          Length = 422

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 139 PQVYPSPGPLTYPKFGPTPFPEY 161
           P  YP+ GP  +P  GP P P +
Sbjct: 68  PGPYPTDGPGPHPSHGPGPHPSH 90


>SB_26467| Best HMM Match : PKD (HMM E-Value=1.1e-06)
          Length = 1826

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/31 (45%), Positives = 16/31 (51%), Gaps = 2/31 (6%)

Query: 143  PSPGPLTYPKFGPTPFPEYE--NFDFDGQIF 171
            P P P T PK G   F  Y   N D++GQ F
Sbjct: 1510 PPPKPTTPPKHGSGGFAGYRAPNLDYNGQPF 1540


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.139    0.434 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,684,742
Number of Sequences: 59808
Number of extensions: 98723
Number of successful extensions: 277
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 9
length of query: 178
length of database: 16,821,457
effective HSP length: 78
effective length of query: 100
effective length of database: 12,156,433
effective search space: 1215643300
effective search space used: 1215643300
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 57 (27.1 bits)